Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02573 ATGGGAGAAGAAGCGGTTTGTGTGCATGCATTAGAAGAAGGAAAGAAGGAAAACAATGAGGAATCGAGAACGGAACTGAAGCGTGACTACGACCAATGCGTTACTGATACTGAACCTCACCTGTCTCCTAATAAGAAACAAGCGAAAGAAGTTTCAAATGATGAAGTGCGCTCTGAGGTTTCCAACCCCAACGTTTCTGCAGCAGAGCATGCACTTACTTTTCAAGATATCAGTAGCCAACCAACTGAATCCGCAAATGTTAACCACACAGAGTGTGGGGAACTGACGTCTACTTGTTTGGAGAATTCAAGTTCTGATGAAACCTTGAGTGATGAAGCTGGTAATCAGAATAATAATAATAATAATAATACTTCTCAGAGTGATAAGGACACGAGTAGTGCTGCAATGACATCCTGTGTAGTGATGGAAATTCCTAAGCATGCGAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTACCAACCACCAGCACCTGTGCGCCGTCCTGCTCTTTATAATGATGGCAATCTCATTGGCTTTCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAGTGGTGGGTTGTTAGAAAGCCCGTGTGGAATGGGATATGCTCGTGATGGAGATTTGGACTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTGTTATCAACGGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGCGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAGATTTGGAAAGAAAGTCTTCTACAAAGCAATGGCAGGGTTCAGACTTATAAAAATCATAGCACCAAACTTGTTGGCATGCCTCATACAAACATAAGTCAATCTGTAGAATGTACAAGCCACTTGTCGTCTTTGCATGTACCGAGTCATTATGAGCAGCACATGTATATGAATCAGACAACTGATGAATGGAAACGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACTCAGGTGTACCGCAGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAACGATTTACACAGGTTACTTTTTATGCCAAATGGACTTCCAGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAACGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCCTACCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTTTCGTTGGCAAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGTGGTGATTTGATTCTTTGCAATGGATGCCCTAGGGCCTTTCATGCAGCCTGCTTGGGTTTACAGTCTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCTAGTAATGGAAGAGAATCTTCTATTGCGAGGCCAATCATGATACGGTTGACGCGGGTTGATAAAACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAACGAACTGTAATAATTTGTGACCAGTGTGAGAAGGAGTACCATGTTGGCTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGACATTATACCAGCTTCCTTGTCAGAACTAATAATCAGGAAGCATGAGGAGAAGGGATTATGTACCTATGGGACCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATTTCTGGTCGTGATCTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCTGTAATGTTGCTGAGCTTCCACTGGTTGCTACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAATATCTCAGAGAGGTGCAGCTAACCCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCAGGCTGTAGAATGA 2667 0.4203 MGEEAVCVHALEEGKKENNEESRTELKRDYDQCVTDTEPHLSPNKKQAKEVSNDEVRSEVSNPNVSAAEHALTFQDISSQPTESANVNHTECGELTSTCLENSSSDETLSDEAGNQNNNNNNNTSQSDKDTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYDYQPPAPVRRPALYNDGNLIGFHGDDEEYLARDDCSGGLLESPCGMGYARDGDLDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQIWKESLLQSNGRVQTYKNHSTKLVGMPHTNISQSVECTSHLSSLHVPSHYEQHMYMNQTTDEWKRVVKKPSSYTSNSGVPQKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQSVPDSGWQCLNCRDNASNGRESSIARPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPASLSELIIRKHEEKGLCTYGTMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGCNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSMLEKTVQQAVE 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02573 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 609 IPR013083 -
Pumo3g02573 888 SMART PHD_3 616 673 IPR001965 -
Pumo3g02573 888 SMART PHD_3 543 584 IPR001965 -
Pumo3g02573 888 ProSitePatterns Zinc finger PHD-type signature. 617 672 IPR019786 -
Pumo3g02573 888 Pfam Tify domain binding domain 477 526 IPR032308 -
Pumo3g02573 888 Pfam Tify domain binding domain 272 326 IPR032308 -
Pumo3g02573 888 CDD PHD1_AIRE 543 583 - -
Pumo3g02573 888 Gene3D - 714 882 - -
Pumo3g02573 888 MobiDBLite consensus disorder prediction 42 56 - -
Pumo3g02573 888 MobiDBLite consensus disorder prediction 101 134 - -
Pumo3g02573 888 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 772 858 IPR016181 -
Pumo3g02573 888 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 531 609 - -
Pumo3g02573 888 ProSitePatterns Zinc finger PHD-type signature. 544 583 IPR019786 -
Pumo3g02573 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 675 IPR013083 -
Pumo3g02573 888 MobiDBLite consensus disorder prediction 421 442 - -
Pumo3g02573 888 MobiDBLite consensus disorder prediction 1 68 - -
Pumo3g02573 888 FunFam PHD finger family protein 715 882 - -
Pumo3g02573 888 Pfam PHD-finger 543 584 IPR019787 -
Pumo3g02573 888 FunFam PHD zinc finger protein 615 675 - -
Pumo3g02573 888 SUPERFAMILY FYVE/PHD zinc finger 614 670 IPR011011 -
Pumo3g02573 888 SUPERFAMILY FYVE/PHD zinc finger 539 587 IPR011011 -
Pumo3g02573 888 MobiDBLite consensus disorder prediction 422 436 - -
Pumo3g02573 888 ProSiteProfiles Zinc finger PHD-type profile. 541 586 IPR019787 -
Pumo3g02573 888 PANTHER AUTOIMMUNE REGULATOR 12 882 - -
Pumo3g02573 888 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02573 Pumo-Chr3 38817888 38827613 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02573 1 883 PHD Transcription Factor Family AT3G53680 52.895 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo3g02573 TDBD 6.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02573 - - gmx:100808999 1694.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02573 3 38817888 38827613 Pumo3g02573 3 38817888 38827613 ECH