Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02563 ATGGCCGGTAAAGGAGAGGGTCCAGCCATCGGAATCGATCTCGGAACCACGTACTCGTGCGACGGTGTCTGGCAACATGATCGGGTCGAGATCATCGCCAACGACCAAGGTAACAGAACGACGCCGTCTTACGTCGGATTCACTAACACCGAGCGTCTCATTGGTGATGCCGCCAAGAACCAAGTCGCCATGAATCCCATCAACACCGTTTTTGATGCCAAGAGATTGATTGGTCGTAGATTTAGTGATGCCTCTGTTCAGAGTGATATTAAATTGTGGCCTTTTAAGGTTATGGTTGGGCCTACTGAGAAGCCAATGATTCAGGTCAGTTACAAGGATGAAGATAAGCAGTTTGCTGTAGAGGAAATCTCTTCTATGGTGCTAATGAAGATGCGCGAGATTGCTGAAGCTTATCTTGGCTCTACAATCAAGAATGTTGTTGTTATTGCTGGTCTTAATGTTATGCGAATTATCAATGAGCCAACTCCTGTGGCCATTGCTTATGGTCTTGACAAGAAGGCTACCAGTGTCGGCGAGAAGAATGTCTTGATTTTTCATCTTGGGGGTGGTACATTTGATGTCTCTTTACTTACTATTGAAGAGGGTATCTTTGAGGTGAAAGCCACAGCTAGGGACACCCATCTTGGAGGTGAGGATTTTGATAACAGGATGAGAAAGAACAAGAAGGATATCAGTGGCAACCCCAGAGCACTGAGGAGGTTGAGGACTGCTTGTGAGAGGGTGAAGAGAACTCTATCTTCCACTGCCCAAACCACCATTGAAATTGATTCTTTGTATGAGGGAATTGATTTCTACTCTACCATTACTTGTGCTAGATTTGAGGAGTTCAACATGGATCTCTTCCGCAAGTGCATGGAACCAGTTGAGAAGTGTTTAAGAGATGCTAAGATGGACAAGAGGTCTGTCCATGATGTTGTACTTGTTGGAGCTCTGCAAGAGCGTTGCATCAATCTTGATGAGGCTGTGGCATATGGTGCAGTTGTTCAAGTTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTCCTGCTTGATGTCACCCCACTCTCTCTTGGGTTGGAAACTGCTGATGGGGTGATGACAGTCTTGATCCCCAGGAACACTACAATCCCAACAAAGAAAGAACAGGTTTTCTCAACCTATTCTAACAACCAACCTGGTGTGTTGATCTAG 1203 0.4555 MAGKGEGPAIGIDLGTTYSCDGVWQHDRVEIIANDQGNRTTPSYVGFTNTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKVMVGPTEKPMIQVSYKDEDKQFAVEEISSMVLMKMREIAEAYLGSTIKNVVVIAGLNVMRIINEPTPVAIAYGLDKKATSVGEKNVLIFHLGGGTFDVSLLTIEEGIFEVKATARDTHLGGEDFDNRMRKNKKDISGNPRALRRLRTACERVKRTLSSTAQTTIEIDSLYEGIDFYSTITCARFEEFNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGALQERCINLDEAVAYGAVVQVAILSGEGNEKVQDLLLLDVTPLSLGLETADGVMTVLIPRNTTIPTKKEQVFSTYSNNQPGVLI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02563 400 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 338 400 IPR029047 -
Pumo3g02563 400 Gene3D - 71 126 - -
Pumo3g02563 400 SUPERFAMILY Actin-like ATPase domain 8 172 IPR043129 -
Pumo3g02563 400 FunFam Heat shock 70 kDa protein 175 234 - -
Pumo3g02563 400 Gene3D Actin; Chain A, domain 4 216 290 - -
Pumo3g02563 400 SUPERFAMILY Actin-like ATPase domain 179 342 IPR043129 -
Pumo3g02563 400 FunFam heat shock 70 kDa protein-like 71 126 - -
Pumo3g02563 400 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Pumo3g02563 400 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 346 400 IPR029047 -
Pumo3g02563 400 PRINTS 70kDa heat shock protein signature 350 369 - -
Pumo3g02563 400 PRINTS 70kDa heat shock protein signature 36 48 - -
Pumo3g02563 400 PRINTS 70kDa heat shock protein signature 323 343 - -
Pumo3g02563 400 PRINTS 70kDa heat shock protein signature 8 21 - -
Pumo3g02563 400 PRINTS 70kDa heat shock protein signature 58 66 - -
Pumo3g02563 400 FunFam Heat shock 70 kDa protein 214 290 - -
Pumo3g02563 400 Pfam Hsp70 protein 149 400 IPR013126 GO:0005524|GO:0140662
Pumo3g02563 400 Pfam Hsp70 protein 9 148 IPR013126 GO:0005524|GO:0140662
Pumo3g02563 400 Gene3D - 173 317 - -
Pumo3g02563 400 FunFam Uncharacterized protein 149 172 - -
Pumo3g02563 400 PANTHER HEAT SHOCK PROTEIN 70KDA 9 400 IPR013126 GO:0005524|GO:0140662
Pumo3g02563 400 Gene3D - 149 172 - -
Pumo3g02563 400 Gene3D - 10 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02563 Pumo-Chr3 38708510 38710420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02563 1 400 Calmodulin-binding Proteins AT3G09440 79.372 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02563 K03283 - gmx:100804917 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02954 5 77181554 77235260 Pumo3g02563 3 38708510 38710420 ECH
Pumo3g02563 3 38708510 38710420 Pumo5g02954 5 77181554 77235260 ECH
Pumo3g02563 3 38708510 38710420 Pumo3g02563 3 38708510 38710420 ECH
Pumo5g02954 5 77181554 77235260 Pumo3g02563 3 38708510 38710420 PCT