Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02553 ATGCTCGACTGCTGCAATAATTTCGAAATCCAAATGGACGACGACGAAGAGTACCCAATTCCCGTCTCAAAGAAACCCTCCACGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCACAGCCAGAACCAACGACCGTTCAGAAAACCGCCGCCGCCGCCGGACACCGGCTGCGGCGATGGGGACGGCGTCATTCCGGCGAGGGAGATTCGATCCTCCGAACTAGAAAACTACAATAACCAACACTTGTTCATGCAAGAGGACGAAATGGCTTCGTGGCTGCACTATCCAATACACGAAGATCCTCCTCCCTTCGATCACAACGATTTCTGCGCCGACATCCTCTACCCGCCGCAAAACGCCACCGCAAGGCAGAACCGCAACAGCTCCTCCGTGCAAACCTCCGTTCGCACGACGGAGCTCCGGCATCCGGCACCTCGGCCTCCGATTCCGCCGAGGAGGCGGCCGGAGCAGGCGCCGAGCAGAATGCAGAATTTCGCGCACTTCGCGAAGCACGGCAATGCGTCGTCGAGTTCGAAGGTCGCGCCGGCGCAGCCGACGGTGGTGGATTCGTGCGACACGCCGGTCGCGACGGCGGAGCAGGCGGAAACCGGCCGCGCGAGCGCCGCCGCCGGTATAACCGCAGCGTCGGATGGCGGAAGAGAGACGGCGACGTGCGACGTGACGGTGACGTCATCGCCTGGCGGTTCGAACGGGAGCGCCGAACCGGATCAGAGAGAACCGGTGGTGGACCGGAAGAGGAAGGGAAGAGAACCGGAGGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAGCAAGTTCGTGGTTCTACATCTACGAAGAGATCTCGTGCTGCAGAAGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCGCTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCACCAATGGGAATGGGGATTGGCATGGGTATGGGCATGGAAATGGGAATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTAGCTAGTTCAAGTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGTCCAAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCGGCACCTGATTCATCCAGAATGCAAGGAGCAAATCATCCAGATAATAATATGCTTAACTCACTTGGTACACTTGATCCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAGCAATACCTTGGTCTCCAACAGGCGCAGTTACAATTAATGCAGGCAATGAACCAATCAAATGTCAGCAAGCCTAGTACCGGTAGGGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACGAAACATGA 1530 0.5333 MLDCCNNFEIQMDDDEEYPIPVSKKPSTQNDEIMELLWQNGQVVMHSQNQRPFRKPPPPPDTGCGDGDGVIPAREIRSSELENYNNQHLFMQEDEMASWLHYPIHEDPPPFDHNDFCADILYPPQNATARQNRNSSSVQTSVRTTELRHPAPRPPIPPRRRPEQAPSRMQNFAHFAKHGNASSSSKVAPAQPTVVDSCDTPVATAEQAETGRASAAAGITAASDGGRETATCDVTVTSSPGGSNGSAEPDQREPVVDRKRKGREPEESEFQSEDVDFESPEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMGMNRPVMPFPNMLASSSLPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMQGANHPDNNMLNSLGTLDPDQSRIPNFTDPYQQYLGLQQAQLQLMQAMNQSNVSKPSTGRGQENPEKHQSDET 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02553 509 CDD bHLH_AtPIF_like 296 359 IPR047265 -
Pumo3g02553 509 Coils Coil 302 322 - -
Pumo3g02553 509 PANTHER TRANSCRIPTION FACTOR PIF3 21 177 IPR044273 GO:0003700|GO:0006355
Pumo3g02553 509 MobiDBLite consensus disorder prediction 126 167 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 230 246 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 251 268 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 205 307 - -
Pumo3g02553 509 FunFam Basic helix-loop-helix transcription factor 291 354 - -
Pumo3g02553 509 Gene3D - 291 354 IPR036638 GO:0046983
Pumo3g02553 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 374 IPR036638 GO:0046983
Pumo3g02553 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Pumo3g02553 509 SMART finulus 302 351 IPR011598 GO:0046983
Pumo3g02553 509 Pfam Helix-loop-helix DNA-binding domain 300 346 IPR011598 GO:0046983
Pumo3g02553 509 MobiDBLite consensus disorder prediction 437 464 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 430 464 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 482 496 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 126 146 - -
Pumo3g02553 509 MobiDBLite consensus disorder prediction 482 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02553 Pumo-Chr3 38567752 38573858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02553 29 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.739 1.09e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02553 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02553 - - gmx:100788491 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02553 3 38567752 38573858 Pumo3g02553 3 38567752 38573858 ECH
Pumo5g02946 5 77061087 77068376 Pumo3g02553 3 38567752 38573858 PCT