Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02536 ATGTTGAATGCCATGGACACAGGTCGCGAGAAGATGATAGTGACCGTTTCACACGTCAACTCCAACTTAAAGCAGGGAACGAGGATTGTGTTTGTATCCCGTTTAAGCATATTGAATAGTCAATATGCTAGAAGACCCAGATGTCCCATTCAGCCCTCAGCCCATATTCTTCCTATTTCTGCATTGCACAGTGGTGTTGATCATGGTTGGGGTAGTGAAATAAGATTGGCTGCTTTTGGTAAATCTATGGAAAGTTTCTATCCTAGGATTCATAAAGATTCAATGTATCTCATATCTAAAGGCCGGGTTGTAGCTGCTAATAAATTGTATTGCCATTTGGACTGGGAGATCAAATTGAATTTGGATTCAAGAATTGAAAATTGTACAGAGGATGAACTAATCCCCTACTATTGGTTCTCCTTCCGGCCTATGAATGGGATTAACCTTGAAGAGGTAGTTGATATAATAGGTAGGGTCAGATTGGTAAGTCCACCTATTACTACCAAGATGAATAGAAAGGACACTCCAATAAGAATTGTGACTCTAGAGGATAGTGCGGGTAACGAAATCAAGTTAGTCCTTTGGAATCAGTTTTGTCACTATGAAGGAGAAGAAGTGGAAAATCACTTCAAAAATAGAAGTTCTACCCTTATTTTGGCTATAAAATCTGCTAGAGTCAAGGTCTATGATAAGGGAAATTCAATTAGTACCATTTCATCTTCTAGGATTTTCTTAAATCCTGGAATCCCTAAGGCATTTGGATTAATCAAAGGAAAGCAGAAAGTGTCTGCCTTAGCTGAAGGACCTAGTGGTGTTGTGCACCCAGAAAGATTATGTGAGATAAAAAAATTAAGGCAGTGGGTGCAACAACAACCCAACAGTGAAGTTCTGATCAAAGTCAAAGCAACACTATCTGATATCAAGAATAAAGATGAAATAGTTTACCCATGTTGCCCGCAGTTGTATTTAGATGTAAAGTGCAAACCAAAGGTGGAGTTAGTAAGAGGGGAATGGATATGTCCGAGATGTCCTAGATCAATCAGAGATTGTGATTACTGCTATAAGATCGAGGCTATTATTTCAAACACTGAATCTTCTATCACTGGGTTTGCCTTTGACAAAGTTGGGGAAGCCATCATGCAGATTTCAGCAGATGACCTCCACTGGCTGAAGGATAATAACAGAGATTATCGTAGCTATCGAGAAATAGTGAATAAAGCCATTTCGACCTCAACTCAGTTTTTGTTCACCCTGAAGATTAGGAAGAACGCCCATAGCCGCCAGATCCGGATGCTATTACCGTCGGCGATGGACGGCAATCGGAAAACCTTTGCAAGGTCAGATTCCGACGTGTCGATGGCGGATCGGCAGCGGCAGAGCGACGTGTGA 1389 0.4104 MLNAMDTGREKMIVTVSHVNSNLKQGTRIVFVSRLSILNSQYARRPRCPIQPSAHILPISALHSGVDHGWGSEIRLAAFGKSMESFYPRIHKDSMYLISKGRVVAANKLYCHLDWEIKLNLDSRIENCTEDELIPYYWFSFRPMNGINLEEVVDIIGRVRLVSPPITTKMNRKDTPIRIVTLEDSAGNEIKLVLWNQFCHYEGEEVENHFKNRSSTLILAIKSARVKVYDKGNSISTISSSRIFLNPGIPKAFGLIKGKQKVSALAEGPSGVVHPERLCEIKKLRQWVQQQPNSEVLIKVKATLSDIKNKDEIVYPCCPQLYLDVKCKPKVELVRGEWICPRCPRSIRDCDYCYKIEAIISNTESSITGFAFDKVGEAIMQISADDLHWLKDNNRDYRSYREIVNKAISTSTQFLFTLKIRKNAHSRQIRMLLPSAMDGNRKTFARSDSDVSMADRQRQSDV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02536 462 Gene3D - 64 130 IPR012340 -
Pumo3g02536 462 Gene3D - 264 435 IPR012340 -
Pumo3g02536 462 Pfam Replication protein A OB domain 146 246 IPR031657 -
Pumo3g02536 462 SUPERFAMILY Nucleic acid-binding proteins 141 256 IPR012340 -
Pumo3g02536 462 SUPERFAMILY Nucleic acid-binding proteins 291 442 IPR012340 -
Pumo3g02536 462 Gene3D - 137 261 IPR012340 -
Pumo3g02536 462 Pfam Replication factor-A C terminal domain 298 431 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02536 Pumo-Chr3 38281544 38283583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02536 71 431 Core DNA Replication Machinery Family AT4G19130 31.746 4.77e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02536 - - han:110930048 174.096