Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02525 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCCTTAACCGAAACCGAGAAGGCAGACCTTGAAGCTATTGCTGCACTCAAAGAGTCCTCTGCTTTTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTTTTTTCAAATAGAGCCCATGTGAATTTGTTGCTAGGAAATCTTAGACGTGCTCTCACAGATTCTCAAGAGGCCCTCAAGTTGTGCCCTTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCTTCTCTTTCATTAAATATGTTGGCAGAAACAAGAGAGTATTGTCTGAAGGGTCTTCAGTTGGACCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCAGATTGGTCTGAAGATATCAGAGAAGGAGAAGCATGAGGCTGAAGTCTCGAAGGCTGTTGCAGAGACAAAGGAACTCGTGTCTGCGATAGAATATAGAGGCCTGAAGGTTGGAAAGGCAATGTATCGAGAACTTACTGGATTAAGGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCGGTTCACCTTGATATGATATCCTTTTCTCTATCAAACATATTTGCAGAAGACCAGCCGTTGTCATGGGACGTTGAAAACAATTACAAACGCGAATTTATTGAATTATACTATGAGTTTGGTTCTGGACTTAGTCTATCAAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACACGGAAGGCGTTGGTGATGAAGAGAAAGATGCAGTTGAGGATTATAAGCAACACATGGGTTCCCCTAAATGGATCAAAGTGAATGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTATGGCAAGTTCAAATCTGGGAAGTGGGCACCTCCAAGTATATGA 1104 0.4212 MALWMEKGSEPLTETEKADLEAIAALKESSAFELKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALSDSETSILFSNRAHVNLLLGNLRRALTDSQEALKLCPSNIKAIYRAAKASLSLNMLAETREYCLKGLQLDPNNEDLKKLDRQIGLKISEKEKHEAEVSKAVAETKELVSAIEYRGLKVGKAMYRELTGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMISFSLSNIFAEDQPLSWDVENNYKREFIELYYEFGSGLSLSKEKLLHCLLEGTAAAHTEGVGDEEKDAVEDYKQHMGSPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKRSSFYGKFKSGKWAPPSI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02525 367 SUPERFAMILY TPR-like 21 157 IPR011990 GO:0005515
Pumo3g02525 367 Coils Coil 141 161 - -
Pumo3g02525 367 Pfam Cns1/TTC4 Wheel domain 201 271 IPR044059 GO:0051879
Pumo3g02525 367 Gene3D Tetratricopeptide repeat domain 27 173 IPR011990 GO:0005515
Pumo3g02525 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 364 - -
Pumo3g02525 367 SMART tpr_5 105 138 IPR019734 GO:0005515
Pumo3g02525 367 SMART tpr_5 71 104 IPR019734 GO:0005515
Pumo3g02525 367 SMART tpr_5 31 66 IPR019734 GO:0005515
Pumo3g02525 367 CDD CTWD_Cns1-like 170 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02525 Pumo-Chr3 38185514 38190670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02525 30 160 Calmodulin-binding Proteins AT3G25230 30.986 4.21e-07 50.1