Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02524 ATGGCTACTACTCAAGGACAAGTCATTTCCTGCAAAGCCGCGGTGGCCTGGGAACCCAACAAGCCATTGTCCATCGAGGACGTTCAGGTAGCACCGCCGCAGAATGGCGAGGTCCGTATCCAAATTCTCTACACTGCTCTCTGTCACACGGATGCTTACACTTGGAGCGGCAAGGATCCAGAAGGTCTTTTCCCATGTATACTTGGTCATGAGGCTGCAGGGATTGTGGAAAGTATTGGAGAAGGTGTTACTGCAGTTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACCAATCTGTGTGGCAAAGTTCGAGCTGCCACTGGAGTAGGGGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCTGTTAATGGAAAACCCCTCTATCATTTTATGGGAACCTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGATCCCAAAGCTCCTTTGGAGAAAGTTTGTCTACTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAACCGGGTTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAATCTGTTGGTGCATCACGGATTATTGGCATAGATATTGATAGCAATAAGTTTGAAAGAGCAAAGAACTTTGGAGTCACCGAGTTTATTAATCCAAAAGAACATGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGATCTGCTTTGGAATGCTGCCATAAGGGCTGGGGGATATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATGTACTCGACCTTTCCAATTGGTGACTGGGCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCCGGTCACAAGTGCCTTGGCTTGTAGACAAGTACTTGAACAAGGAAATCAAGGTTGATGAGTACATTACCCACAGTTTGACTCTTGCGGAGATCAATAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTTCGTTGTGTGCTTGCAATGAATGTATGA 1143 0.4611 MATTQGQVISCKAAVAWEPNKPLSIEDVQVAPPQNGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESIGEGVTAVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSVNGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSVGASRIIGIDIDSNKFERAKNFGVTEFINPKEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGISVIVGVAASGQEICTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYLNKEIKVDEYITHSLTLAEINKAFDLMHEGGCLRCVLAMNV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02524 380 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 378 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pumo3g02524 380 Gene3D - 183 321 - -
Pumo3g02524 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Pumo3g02524 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pumo3g02524 380 SUPERFAMILY GroES-like 4 198 IPR011032 -
Pumo3g02524 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Pumo3g02524 380 Gene3D - 14 373 - -
Pumo3g02524 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Pumo3g02524 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
Pumo3g02524 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Pumo3g02524 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Pumo3g02524 380 Pfam Zinc-binding dehydrogenase 207 329 IPR013149 -
Pumo3g02524 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 14 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02524 Pumo-Chr3 38179883 38183596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02524 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.519 1.11e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02524 K00121 - gmx:100793008 764.222