Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02518 ATGGAAGAGAAAGCCAAGAAAAAGGGGAGAAAAGATATTGAAGTAATTAATAGTAATGTTGCTGATGATAAAGAAGTGCAGTTCTTGGATGACAACCAAGAAAGCAAGATGAAGAAAGGAAAAAAATATGATTCATCATTAAATGGAAAGCAAGAATTGGGTTTTTCAAAACCAAGCAAAAAAATGAGGAAAGATAATGGGTTAAAAAACAATGAAGGTGAAGAAGACAATCAAGGCAAGCAGATGATGACGAAGAAGTTGGGTGAAGAAAGCCAACATGAGGATTACAATGAATTTAAAAGCCATGAAAATAAAGATGACAGCCAATACAAGAAGAAGGAGGAGAAGAAGAAGAAGAAAAAACTGAGTGAAGAAAGCAAAAGTAAAGAGTATAATGAGTTTGGAAGCAATGAAGTTGGAGATGATGACCAAGGTAAGAAGATGAAGAAGAAGAAACTGTGTGACAAAAGCAAAAGTAAGGAGAATTGTGAGTTCAATAGCAAGCATATGAAGAAGAAGAAATCAGATGAAGAAAGCCAACATGAAGATTACAATGAATTTAAAAGCAATGAAGATAAAGATGACAGTCAATACAAGAAGGAAGAGAAGAAGAGGAAGAAGAAAAAACTGAGTGAAGAAAGCAAAAGTAAGGAGTATAATGAGTTTGAAAGCAATGAAGGTGAAGATGATGGCCAAGGTAAGAAGAGGAAGAAGAAAAAACTGAGTGAAGAAAGCAAAAGTAAGGAGTACAATGAGTTTGAAAGCAATGAAGGTGATGATGATGTCCAAGGTAAGAAGACGAAGAAGAAGAAACTGCATGACAAAAGCAAAAATAAGGAGAATAGTGAGTTCAATAGCAATGAAGGTGATGCCACTGAATTTGATGATCAAAGCAAGAAGATGAAGACAAAGAAGAAAGCTAAGGCAGATACTGGTGAATCTCCTAATCGTGCACACAGTGGATCATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTGGATATTTGTTGTGATGGCTTAGTCCGTGGGAAAAGGTTTACACCAGAAGAAGATGACAAGATTAAATTGGCTGTTTTTGATTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAAGTCTCATCGTGAAGTTAGAGATTGTTGGAAGGAAATTGGAGCAGCCTTACCTGACAGGCCTTGTGTTAGTGTGTATACTCGTGCTCATATTTTGTTTGAAAGGGGTGAGAAGCGTAAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTGATTGGAAATCAATAGCTGAAGCATTGGGCAAACATCGATTTCATGTAAAGGATGCATGGCGTAGAATAAAATTAACCAATACAAATAATGGACGATGGACCCAAGAGGAGTATCAAAATTTATTTGATTTAGTAAACCTGGATCTACGTGTGAGAGCTTCACAGGGTTTTAGAAAATCAAAACATGGTATGCTGCGAGATAATATTGGTTGGGAGGCAATTGGTGATAAATTGACCACTAGATCCAGTGCAGTCTGCTGCCAAAAGTGGTATGATAAATTAACATCACCTATGGTTGCTAATGGTGTATGGAGTGATACTGATGACTATCGCCTGGTAGATGCTTTATTTACTTTGGATGCTTGCTGCATGGAGGAGGTAGATTGGGATAATCTGCTTGAGCATAGGCCTGGTGATGTATGTAGAAAACGCTGGAACCAAATGGTCCAATATATTGGAGAGCATGGGGGGAAGTCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATTTTGCCCCGACTTATTGGAAGTAAGAGAGGCCTTTGATGCAAAACCTGTGGTTTGTTGA 1881 0.378 MEEKAKKKGRKDIEVINSNVADDKEVQFLDDNQESKMKKGKKYDSSLNGKQELGFSKPSKKMRKDNGLKNNEGEEDNQGKQMMTKKLGEESQHEDYNEFKSHENKDDSQYKKKEEKKKKKKLSEESKSKEYNEFGSNEVGDDDQGKKMKKKKLCDKSKSKENCEFNSKHMKKKKSDEESQHEDYNEFKSNEDKDDSQYKKEEKKRKKKKLSEESKSKEYNEFESNEGEDDGQGKKRKKKKLSEESKSKEYNEFESNEGDDDVQGKKTKKKKLHDKSKNKENSEFNSNEGDATEFDDQSKKMKTKKKAKADTGESPNRAHSGSSKPKRVTFSDQVDICCDGLVRGKRFTPEEDDKIKLAVFDYIESHGLGDEGLDMVLHCKSHREVRDCWKEIGAALPDRPCVSVYTRAHILFERGEKRKWTPEEYEFLRKVKEQHGSDWKSIAEALGKHRFHVKDAWRRIKLTNTNNGRWTQEEYQNLFDLVNLDLRVRASQGFRKSKHGMLRDNIGWEAIGDKLTTRSSAVCCQKWYDKLTSPMVANGVWSDTDDYRLVDALFTLDACCMEEVDWDNLLEHRPGDVCRKRWNQMVQYIGEHGGKSFAEQVEILAKRFCPDLLEVREAFDAKPVVC 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02518 626 Coils Coil 193 220 - -
Pumo3g02518 626 MobiDBLite consensus disorder prediction 276 313 - -
Pumo3g02518 626 ProSiteProfiles Myb-like domain profile. 533 586 IPR001005 -
Pumo3g02518 626 SUPERFAMILY Homeodomain-like 511 589 IPR009057 -
Pumo3g02518 626 Gene3D - 421 459 - -
Pumo3g02518 626 MobiDBLite consensus disorder prediction 18 327 - -
Pumo3g02518 626 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 417 465 IPR017930 -
Pumo3g02518 626 Gene3D - 460 535 - -
Pumo3g02518 626 CDD SANT 419 448 IPR001005 -
Pumo3g02518 626 MobiDBLite consensus disorder prediction 18 46 - -
Pumo3g02518 626 ProSiteProfiles Myb-like domain profile. 412 461 IPR001005 -
Pumo3g02518 626 ProSiteProfiles Myb-like domain profile. 462 531 IPR001005 -
Pumo3g02518 626 Coils Coil 105 132 - -
Pumo3g02518 626 PANTHER GB|AAC33480.1 5 625 - -
Pumo3g02518 626 MobiDBLite consensus disorder prediction 56 267 - -
Pumo3g02518 626 SUPERFAMILY Homeodomain-like 417 478 IPR009057 -
Pumo3g02518 626 SMART sant 466 533 IPR001005 -
Pumo3g02518 626 SMART sant 416 463 IPR001005 -
Pumo3g02518 626 SMART sant 537 588 IPR001005 -
Pumo3g02518 626 SMART sant 343 414 IPR001005 -
Pumo3g02518 626 Pfam Myb-like DNA-binding domain 420 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02518 Pumo-Chr3 38072169 38075679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02518 414 586 MYB Transcription Factor Family AT4G32730 26.374 4.97e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g02518 Myb_DNA-bind_6 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02518 - - gmx:100785842 1005.36