Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02509 ATGTTGAATGCCATGGACACAGGTCGCGAGAAGATCATAGTGACCGTTTCACACGTCAACTCCAACTTAAAGCAGGGAACGAGGTCTGGCTTCACTTTTTGTGACAACCTTGGTCACTTTCACCATGTCATTTTAAGCGAAGAGTTTCATACATTTGTCTACAACGAACAAATTAAGAAAGGCTCCGTCCTTGAACTGCTAGAGTATACATGCAATGGGTCCTTGCCGATTGTGTTTGTATCCCGTTTAAGCATATTGAATAGTCAATATGCTGGAAGACCCAGATGTCCCATTCAGCCCCCAGCCCATATTCTTCCTATTTCTGCATTGCACAGTGGTGTTGATCATGGTTGGGGTAGTGAAATAAGATTGGCTGCTTTTGGTAAATCTATGGAAAGTTTCTATCCTAGGATTCATAAAGATTCAGTGTATCTCATATCTAAAGGTCGGGTTGTAGCTGCTAATAAATTGTATTGCCATTTGGACTGGGAGATCAAATTGAATTTGGATTCAAGAATTGAAAATTGTGCAGAGGATGAACCAATCCCCTACTATTGGTTCTCCTTCCGGCCTATGAATGGGGTTAACCTTGAAGAGGTAGTTGATATAATAGGTAGGGTCAGATTGGTAAGTCCACCTGTTACTACCAAGATGAATAGAAAGGACACTCCAATAAGAATTGTGACTCTAGAGGATAGTGCGGGTAACGAAATCAAGTTAGTCCTTTGGAATCAGTTTTGTCACTATGAAGGAGAAGAAGTGGAAAATCACTTCAAAAATAGAAGTTCTACCCTTATTTTTGCTATAAAATCTGCTAGAGTCAAGGTCTATGATAAGGGAAATTCAATTAGTACCATTTCATCTTCTAGGATTTTCTTAAATCCTGGAATCCCTAAGGCATTTGGATTAATCAAAGGAAAGCAGAAAGTGTCTGCCTTAGCTGAAGGACCTAGTGGTGTTGTGCACCCAGAAAGATTATGTGAGATAAAAAAATTAAGGTTGTGGGTGCAACAACAACCCAACAGTGAAGTTCTGATCAAAGTCAAAGCAACACTACCTAATATCAAGAATAAAGATGAAATAGTTTACCCATGTTGCCCGCAGTTGTATTTAGATGTAAAGTGCAAACCAAAGGTGGAGTTAGTAAGAGGGGAATGGATATGTCCGAGATGTCCTAGATCAATCAGAGATTGTGATTACTGCTATAGGATCGAGGCTATTATTTCAAACACTGAATCTTCTATCACTGGGTTTGCCTTTGACAAAGTTGGGGAAGCCATCATGCAGATTTCAGCAGATGGCCTCCACTGGCTGAAGGATAATAACAGAGATTACCGTAGCTATCGAGAAATAGTGAATAAAGCCATTTCGACCTCAACTCAGTTTTTGTTCACCCTGAAGATTAGACAGAACGCCCATAGCCGCTAG 1428 0.4027 MLNAMDTGREKIIVTVSHVNSNLKQGTRSGFTFCDNLGHFHHVILSEEFHTFVYNEQIKKGSVLELLEYTCNGSLPIVFVSRLSILNSQYAGRPRCPIQPPAHILPISALHSGVDHGWGSEIRLAAFGKSMESFYPRIHKDSVYLISKGRVVAANKLYCHLDWEIKLNLDSRIENCAEDEPIPYYWFSFRPMNGVNLEEVVDIIGRVRLVSPPVTTKMNRKDTPIRIVTLEDSAGNEIKLVLWNQFCHYEGEEVENHFKNRSSTLIFAIKSARVKVYDKGNSISTISSSRIFLNPGIPKAFGLIKGKQKVSALAEGPSGVVHPERLCEIKKLRLWVQQQPNSEVLIKVKATLPNIKNKDEIVYPCCPQLYLDVKCKPKVELVRGEWICPRCPRSIRDCDYCYRIEAIISNTESSITGFAFDKVGEAIMQISADGLHWLKDNNRDYRSYREIVNKAISTSTQFLFTLKIRQNAHSR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02509 475 Gene3D - 181 313 IPR012340 -
Pumo3g02509 475 SUPERFAMILY Nucleic acid-binding proteins 189 304 IPR012340 -
Pumo3g02509 475 Pfam Replication factor-A C terminal domain 346 473 IPR013955 -
Pumo3g02509 475 SUPERFAMILY Nucleic acid-binding proteins 329 467 IPR012340 -
Pumo3g02509 475 Gene3D - 314 475 IPR012340 -
Pumo3g02509 475 Gene3D - 113 178 IPR012340 -
Pumo3g02509 475 Pfam Replication protein A OB domain 193 294 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02509 Pumo-Chr3 37972873 37974578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02509 119 474 Core DNA Replication Machinery Family AT4G19130 31.635 1.26e-46 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02509 K07466 - jre:109008783 182.57