Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02495 ATGTCAACTGTGTCCAAAGATGACAACTTGGTGCTGTCTTCGGAGGACTCTTCGAGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGCCTCTCTTCTGGCCCTTCTTCATCAAAGTCTCATCACCACCATGTCCATGCTCATGCTCGTGCTCCTTATGCTAGAATTTACACTGCTAAGGATTTTCCTTCTTCTGCAGCAGCATCATCACCTTCCTCTTCTTCCTCTTCCTCTCCCAACAACAACATCACTGCTGGCACCAAGAGAACTGCTGATTCTCTTGTTGCCAATAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGATCATATAGAGTGAATAGCTACAATAGCCATGCAAAATCAACTGAAGTATTCAACTCTGTGGCTGAGAAGAGTAAGACCAATAATACAGTGGTAAGGAAGAGTGCTGACAATGGCAATGATAATAACATCAATGCCAAAGAAAAAAGACACCTTAGGAGTTCCCTGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAAGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCGCAAACATTGGAGGATATGTTTAATGAATCAACTACAGTCACCATTTGCAAAGGATCAAATGGTGAGGATCATGGTATTATTATCGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCCTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTAGCACCAAGATTGGAAGAAAACATCAGACAGAAATGCAAGCCCATATAG 879 0.4357 MSTVSKDDNLVLSSEDSSSPEESELELGLGLSLSSGPSSSKSHHHHVHAHARAPYARIYTAKDFPSSAAASSPSSSSSSSPNNNITAGTKRTADSLVANNRPSQVVGWPPLRSYRVNSYNSHAKSTEVFNSVAEKSKTNNTVVRKSADNGNDNNINAKEKRHLRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTICKGSNGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIRQKCKPI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02495 292 Gene3D - 161 283 - -
Pumo3g02495 292 ProSiteProfiles PB1 domain profile. 166 273 IPR000270 GO:0005515
Pumo3g02495 292 MobiDBLite consensus disorder prediction 66 104 - -
Pumo3g02495 292 FunFam Auxin-responsive protein 161 281 - -
Pumo3g02495 292 MobiDBLite consensus disorder prediction 1 18 - -
Pumo3g02495 292 MobiDBLite consensus disorder prediction 1 50 - -
Pumo3g02495 292 Pfam AUX/IAA family 25 280 IPR033389 -
Pumo3g02495 292 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 276 IPR003311 GO:0005634|GO:0006355
Pumo3g02495 292 MobiDBLite consensus disorder prediction 66 102 - -
Pumo3g02495 292 SUPERFAMILY CAD & PB1 domains 161 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02495 Pumo-Chr3 37782610 37787307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02495 159 290 B3 DNA Binding Superfamily AT1G59750 33.582 2.32e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo3g02495 AUX_IAA 8.3e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02495 K14484 - gmx:100779400 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02495 3 37782610 37787307 Pumo3g02495 3 37782610 37787307 ECH
Pumo5g02908 5 76380176 76382368 Pumo3g02495 3 37782610 37787307 PCT