Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02489 ATGTCGAAGAGAGGGCGCGGTGGATCGGCGGGGAACAAGTTCCGCATGTCGCTGGGTCTTCCAGTGGCGGCGACGGTGAACTGCGCCGACAACACGGGGGCGAAGAACCTGTACATCATTTCGGTGAAAGGGATCAAAGGGCGTTTGAACCGTCTTCCCTCGGCTTGCGTTGGCGACATGGTGATGGCCACCGTGAAGAAGGGGAAACCCGATCTGAGGAAGAAGGTGTTGCCAGCTGTCATCGTTCGCCAGCGCAAGCCCTGGCGCCGAAAGGACGGTGTTTACATGTACTTCGAAGGTACCTCTTCCTCCACTTCACTTTATCTCGTTTTCGTATTCTATTATTATGCGTTGCTTCTGTTCTATGATGGTGAGTGTCCCGTTTTGTGCTTGGGCATTCACTCTGGGAAGCATATAGTTGTGAAATTGCCAGTTTTAAACAGCATGATGTTTATCTCTTTGCATTGTGTTACCTGTCTGCTGGTAAATCCCTAA 495 0.5131 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEGTSSSTSLYLVFVFYYYALLLFYDGECPVLCLGIHSGKHIVVKLPVLNSMMFISLHCVTCLLVNP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02489 164 Gene3D Ribosomal protein L14 1 103 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo3g02489 164 SMART Ribosomal_L14_2 19 110 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo3g02489 164 SUPERFAMILY Ribosomal protein L14 11 100 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo3g02489 164 Hamap 50S ribosomal protein L14 [rplN]. 19 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo3g02489 164 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 99 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo3g02489 164 Pfam Ribosomal protein L14p/L23e 22 99 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02489 Pumo-Chr3 37732131 37733790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02489 1 102 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 94.118 2.61e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02489 K02894 - mof:131151878 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02489 3 37732131 37733790 Pumo3g02489 3 37732131 37733790 ECH
Pumo5g02900 5 76282853 76284253 Pumo3g02489 3 37732131 37733790 PCT