Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02484 ATGGAAGCACATCCTACTTTCTCCATTGAAAGATCGAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTTCTTCATCCTTGTCAGTCCTTCCAATACCCCCAGAAGAGATGTATCCCAAACTGCCTGAATCACAGTTGGACTTTGTAGAACAAGAGCTTATGACAAGACCTTTTACTCATTCAAGTTATTTAAATTCCAGTGGAGTAGTTGGGCACATTTTTTCATCTTCCCCTGGATATTCAACTGATCTTCAGCACTCATCTCTTTCACCTGATGAAAAACACTCTACTAATGCTCATTTTATTTCACAATCATCAACTGACATGCCCCAATTTCCATTATCATATTCTTCAAATACTAGACCACCAACTTCAACAACACCAAGCCATTATTCCAAAGAAAACAGTGCTTCCTGGCATACAGATTCCCTGCCAAGCTTTCTGGATTTTCCTGCAAATGGCTCTATTGATAATAATCGGGCAGAAAGTAGTGCCTGCCCTATCGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGAATGACCTACTTACTGACGACATTCAAGATCTTGAGCCAAAGGTTTCAAAACCATTTTCACAGTTTCCTGGACATCAATCCCAAGGCCATCAACAACTTCCTGCTTCATATGGAGAAAATTGCACTGGTGCTGCCCTCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGAGGGAGTGAGAAAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGTCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTATGGAGAAAAAAGCAAGTTCCATTGAAGAGATGTCATCCCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAACCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAAAGCAATGTAAGCCTGGAACTGAAGCATTCAAGGCACCGTCATCTACCATTGAGACTCCATCTGGAGTGTCTTCAAATGCTACGAGAGATTCTCCGGCCAATAATGAAATGGAAGCATCACAAGTGGACCGTTGCAGGTCAGAACCTGATCAAGTTAACGGCAGTACCACAATTGAGGAAGGCTCACTGGAAAAGCGTGGGAATCCTGATTCTCCCAAAACTCAACATGCTATTGCTAGTGATGATAGTGCTCAAGCCTCAAAGCGTCAAAGAACAGAGTAAGCCATATGAATCTGCTGAATCACAGTATCAACAGTGA 1425 0.4267 MEAHPTFSIERSKQLNNMGMSGALSSSLSVLPIPPEEMYPKLPESQLDFVEQELMTRPFTHSSYLNSSGVVGHIFSSSPGYSTDLQHSSLSPDEKHSTNAHFISQSSTDMPQFPLSYSSNTRPPTSTTPSHYSKENSASWHTDSLPSFLDFPANGSIDNNRAESSACPIEWAERLISDDDTLTSNWNDLLTDDIQDLEPKVSKPFSQFPGHQSQGHQQLPASYGENCTGAALSSSANSAPAKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVMEKKASSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFESNVSLELKHSRHRHLPLRLHLECLQMLREILRPIMKWKHHKWTVAGQNLIKLTAVPQLRKAHWKSVGILILPKLNMLLLVMIVLKPQSVKEQSKPYESAESQYQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02484 474 Coils Coil 330 350 - -
Pumo3g02484 474 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 217 371 IPR044848 GO:0003700
Pumo3g02484 474 MobiDBLite consensus disorder prediction 107 138 - -
Pumo3g02484 474 SUPERFAMILY Homeodomain-like 240 296 IPR009057 -
Pumo3g02484 474 FunFam Myb family transcription factor 241 299 - -
Pumo3g02484 474 NCBIfam myb-like DNA-binding domain, SHAQKYF class 242 296 IPR006447 GO:0003677
Pumo3g02484 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Pumo3g02484 474 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Pumo3g02484 474 Pfam MYB-CC type transfactor, LHEQLE motif 327 371 IPR025756 -
Pumo3g02484 474 Gene3D - 241 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02484 Pumo-Chr3 37695539 37700087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02484 53 369 G2-like Transcription Factor Family AT4G28610 51.163 1.04e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo3g02484 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02484 - - gmx:100793593 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02484 3 37695539 37700087 Pumo3g02484 3 37695539 37700087 ECH
Pumo5g02897 5 76261803 76268507 Pumo3g02484 3 37695539 37700087 ECH
Pumo5g02897 5 76261803 76268507 Pumo3g02484 3 37695539 37700087 PCT
Pumo5g03814 5 88095893 88099988 Pumo3g02484 3 37695539 37700087 PCT