Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02479 ATGAAGTGCCTACGCTCCGGGGAGTCGCTGGGAGGGGCTGATGAATTGTTTCCTTCATCATCTGGATCTCTTGCAAGTGCAATCAAGGACTTTTCAGCCAGTGAAAATTCTTACCTGGCTGAACAGATTGATAAGAAGCCAGACACTGGCAACATAGAAGAAGCTGAATCATCCTTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCCTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAAAGACATTCTCAAAATCATGCGGAACCGCAAATGTCTATACATTCTGTTGGCTTACTATTGGAAGCTGTCTTCCTAAAGGCAAAATCTTTGCAGGTTCTTGAAAGGTTTAAGGAGGCTGCCCAATCTTGCAAAGTTATTCTGGATATAGTGGAGTCTTCATTGCCTGAAGGCATGCCTGATAACTTTGGTGCTGAATGTAAATTGCATGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTTCACGTGAAGCTATTTTGTCTTACCGACGAGCACTCCTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTTTATAGTGGAGGAGAAGCAACACCCCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGTTAAGAAAAGTCTCTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGGACTATCCATCGAAGTGAAAGGTACTATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTCAGCAAGTTGTTGAGGAGTAGAGAGGACCAACACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTACTCTTGCAGAAGAAGGAGTAAGCTTTGCTCAGCGAGTGCTTCAGAACTTGGATGGTAGATGTAATCAACTAGAAAATCATGCCAATTTCTTTCTTGGTGTTTCACTTTCAGCACTCTCAAAATTGGCCGTTTCTGATTCTGAGAGGTTTAAGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGGCAGAATGAAAGAGCCCCTTGTACTATACCATCTCAGTTTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTGCTTTGTGAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTATTGTTAGCCCGGATATTGTCTGCTCAAAAACAGTTTTTGGATGCCGAATCTATTATCAATACTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAATGCGATTGAGACATATACTCAGCTGCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGGAAGAAGCTATATAAGGACAATAGAGACCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTGCTTATGTATATATCAGTCTTTTACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCACTCTCTGCTCCTAGATGTCATGCAATAGGCATAATGTACGAAGCAAAGGGCCGTTACAAAGAGGCTCTAAAAGCTTTTGGTGATGCCTTGGACATTGATCCTGGCCATGTCCCTAGCTTAATCTCCACTGCTGTAGTTCTTAAACGGTGTAGTAATAAATCAAATCCAGCAGTTAAAAGCTTTCTGATGGATGCGCTACGGCACGACAGATTCAATGCTTCTGCATGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGCATCATCATTAGTTGAAGCTGCGGAGTGTTTTCAAGCAGCACACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2139 0.4165 MKCLRSGESLGGADELFPSSSGSLASAIKDFSASENSYLAEQIDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKRHSQNHAEPQMSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLHETLNKAVELLPELWKLADCSREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRSERYYALALCYYGAGKDLVALDLLSKLLRSREDQHHVPGLLMASKICCENSTLAEEGVSFAQRVLQNLDGRCNQLENHANFFLGVSLSALSKLAVSDSERFKRQSEALHALETAGRMKEPLVLYHLSLEYAEQRKLDAALYYAKCFVKLEGGSNVKGWLLLARILSAQKQFLDAESIINTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDIAYVYISLLQWHDAEVCLSKSKAIKPLSAPRCHAIGIMYEAKGRYKEALKAFGDALDIDPGHVPSLISTAVVLKRCSNKSNPAVKSFLMDALRHDRFNASAWYNLGLLHKAEGTASSLVEAAECFQAAHFLEESAPVEPFR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02479 712 Gene3D Tetratricopeptide repeat domain 20 354 IPR011990 GO:0005515
Pumo3g02479 712 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Pumo3g02479 712 Pfam Tetratricopeptide repeat 603 633 IPR013105 -
Pumo3g02479 712 SUPERFAMILY TPR-like 511 684 IPR011990 GO:0005515
Pumo3g02479 712 SMART tpr_5 510 543 IPR019734 GO:0005515
Pumo3g02479 712 SMART tpr_5 320 353 IPR019734 GO:0005515
Pumo3g02479 712 SMART tpr_5 135 168 IPR019734 GO:0005515
Pumo3g02479 712 SMART tpr_5 600 633 IPR019734 GO:0005515
Pumo3g02479 712 SMART tpr_5 474 507 IPR019734 GO:0005515
Pumo3g02479 712 SMART tpr_5 670 706 IPR019734 GO:0005515
Pumo3g02479 712 SMART tpr_5 566 599 IPR019734 GO:0005515
Pumo3g02479 712 Coils Coil 377 397 - -
Pumo3g02479 712 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g02479 712 Gene3D Tetratricopeptide repeat domain 411 541 IPR011990 GO:0005515
Pumo3g02479 712 PANTHER PROTEIN NPG1 1 712 IPR043376 -
Pumo3g02479 712 SUPERFAMILY TPR-like 309 503 IPR011990 GO:0005515
Pumo3g02479 712 Gene3D Tetratricopeptide repeat domain 542 707 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02479 Pumo-Chr3 37650464 37656731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02479 1 712 Calmodulin-binding Proteins AT4G28600 58.702 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02479 K21843 - gmx:100800762 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02479 3 37650464 37656731 Pumo5g02885 5 76128524 76132780 PCT