Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02473 ATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAGTTCTCATTGAAGACAGTGTTAATGCTTGCTGATCAATTGATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCGGACAATTTTCTAATGGGTCTAGGACGAAAAGCAAATCAAGTGTATGCCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACGGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCACTGCGATTTGAGGACAAGCCAGATTATTCGTATTTGAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAGTTTGATTACATTTTTGACTGGACTATGTTAAAGTATCCACAGATTAGTGGCAGCTCCAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGCAGGCAGGTCCACATGTACAAAAAGCAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCAGTTGAAGCATTCTCTCGGAGGAACCCTGCAAATGCTGCAAATGCTAGTCCTCGTGTTGATCACACCAAACATAGGAGTTTTGAGGATGTACCGGTACAAAAGGATTTGCACTATGCGCAACACAATCCCGCTCGATATGGGAGCAGTTCAAGAAGAGCCATGATCACATCAAACAAGCCAATATCCTCAGGTGACCATACTGGCAGGCCAACCGGGAGCCGTCCATCTGGTGCTCACAGAATTCAACCTGTGTATGACACCAAACAAGCAGCTTATACACGCGGTGGCTCTATAAGAGGCCACCGCGATGATCCTCTGAGGAGCTTTGAGCTCCTCAATATCAGGAAGTAA 1197 0.4419 MLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISGSSRGRHGTGKAAMQAGPHVQKAEKISVGKEIREKFSGAVEAFSRRNPANAANASPRVDHTKHRSFEDVPVQKDLHYAQHNPARYGSSSRRAMITSNKPISSGDHTGRPTGSRPSGAHRIQPVYDTKQAAYTRGGSIRGHRDDPLRSFELLNIRK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02473 398 SMART serkin_6 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02473 398 PANTHER CASEIN KINASE-RELATED 12 290 - -
Pumo3g02473 398 Gene3D Transferase(Phosphotransferase) domain 1 3 281 - -
Pumo3g02473 398 MobiDBLite consensus disorder prediction 325 367 - -
Pumo3g02473 398 Pfam Protein kinase domain 20 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02473 398 MobiDBLite consensus disorder prediction 325 352 - -
Pumo3g02473 398 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02473 398 SUPERFAMILY Protein kinase-like (PK-like) 3 234 IPR011009 -
Pumo3g02473 398 FunFam CK1 family protein kinase 1 269 - -
Pumo3g02473 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02473 Pumo-Chr3 37572455 37580777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02473 35 225 MAP Kinase Kinase Kinase AT1G62400 27.919 3.76e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pumo3g02473 Pkinase 1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02473 K08960 - gmx:100789031 765.377