Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02472 ATGATGAAAGTGGGATTTGAGGTGGTTCATGCAAATTATAATCCAAACATGATTCGTCCACACATGCATGAAACATGGGATCACTACTCAAATATTACTTCCTTGCCATTTTCAGCTCCAACCCCTTCAAACCCTTATCCAAAGCCAGCAACAGAAAACCACAGCCTCAACTTGGGGCAGAATAATGAACTCTGTGATTGGATGGAGGAGCACATTAGTGACATCACCGAACACCTTGTTGAAGACTTACCAGAAACAACCACTTCTGATCATAACTTGCTTGCTAATAACCCAACAAGGGTTTCCCATCACAACCTTGTTCCCTCACTTTCACCCAACTTCAGCCAAAGAAAGCCCTCATGTTTTAGACCCCAATTTGACTCCTTCACCAACGACCCCCCAAACTTCAATCTTCACATTCAAACAAACACCACAAGTTTAGATCAAAACCACAATGTTTATGATCAAGGGTTGAACCTAATAACCCTTCTAATGGAGTGTGCAGTGGCAATCTCAGTTGACAACCTTGGTGAGGCTCACAGGATGTTACTAGAGCTAACACAAGTGGCCTCACCCTACAAAGCATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAGGCCATGACTAGCAGGGTGATGAATTCTTGGCTTGGAGTGTGTTCCCCTTTGGTTGATCATAGAAGCATTAACTCAGCATTCCAAATGTTCAACAACATTTCCCCTTTCATCAAATTTGCTCACTTCACTTCCAACCAGGCAATTCTTGAGGCAGTGAGCCATTGTGACAGCATTCACATCATTGACTTGGACATCATGCAAGGGCTGCAATGGCCAGCCTTTTTCCACATATTAGCCACCAGAATGGAGGGTCCACCACAGGTCACAATGACAGGTTTGGGAACCTCAATGGAACTCCTTGTTGAAACTGGGAAACAGCTCTCAAACTTTGCAAGAAGGCTTGGCATGTCACTGAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAGGTAATTGATGTGTCCATGTTGCATGTAAAGCCTGGTGAGGCAGTGGCAGTGCACTGGTTGCAGCATTCACTGTATGATGCAACTGGACCTGATTGGAAAACACTGAGGCTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGGGCTTTCTTGGACCGTTTTGTTGCCTCCTTGCACTACTACTCCACCCTCTTTGATTCTCTTGGAGCATTTCTACACAATGATGATGCAAACAGGCACCGTGTGGAGCATGGCCTTCTCTCTAGGGAGATCAACAATGTGTTGGCCATAGGAGGCCCTAAGAGGAGTGGTGAAGACAAGTTTAGGCAGTGGAGAAGTGAGCTTGCTAGGCACTGTTTTGTGCAGGTTCCAATGAGTGCCAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTTTTCACCAGCTTATGGGTATAGCCTTGCACAAGTTGAGGGAACATTAAGGCTTGGATGGAAGGATACAAGCTTGTACACAGCTTCTGCATGGACCTGCAGTACTTCTAGATAG 1566 0.4547 MMKVGFEVVHANYNPNMIRPHMHETWDHYSNITSLPFSAPTPSNPYPKPATENHSLNLGQNNELCDWMEEHISDITEHLVEDLPETTTSDHNLLANNPTRVSHHNLVPSLSPNFSQRKPSCFRPQFDSFTNDPPNFNLHIQTNTTSLDQNHNVYDQGLNLITLLMECAVAISVDNLGEAHRMLLELTQVASPYKASCAERVVAYFAKAMTSRVMNSWLGVCSPLVDHRSINSAFQMFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTGLGTSMELLVETGKQLSNFARRLGMSLKFHPIASKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGAFLDRFVASLHYYSTLFDSLGAFLHNDDANRHRVEHGLLSREINNVLAIGGPKRSGEDKFRQWRSELARHCFVQVPMSANSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCSTSR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02472 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 512 IPR005202 -
Pumo3g02472 521 ProSiteProfiles GRAS family profile. 151 516 IPR005202 -
Pumo3g02472 521 Pfam GRAS domain family 160 516 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02472 Pumo-Chr3 37563730 37565859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02472 155 516 GRAS Transcription Factor Family AT3G54220 55.827 1.19e-136 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo3g02472 GRAS 1.2e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02472 - - gmx:100775656 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02472 3 37563730 37565859 Pumo3g02472 3 37563730 37565859 ECH