Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02471 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAAAACCAGGGCTGCTGGGAAGAAAAAGGAGGAGGATAGTAATGGAGGAAACCAGGATTCGAATGAAGCCGCCGTGGATGAAGCATTGCTCTCCAGTGTCACGAAGCAGAAGGTGGCAGCAGCAAAGCAGTACATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACAATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAGACCAGCGGTCATGTATATGCAATGAAGAAGCTAAAAAAATCAGAGATGCTTCGGAGAGGCCAGGTTGAACATGTTAAAGCTGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAGGATGAGGAATATCTGTATCTTATTATGGAGTATCTACCAGGTGGGGATATGATGACTCTACTTATGAGAAAGGATACCTTAACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACTATTCTGGCTATAGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCAGACAACTTATTACTTGATAGATATGGACACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTACACTTGAAGAAAAGGATTTTTCTGTGGGTCAGAATGTGAATGGATCTACACAAAATGAAGAGCGCACAACTCCTAAACGCTCACAACAAGAACAATTGCAACATTGGCAAATGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCGGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTACGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGATAGTAAACTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCTGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAGAGGCTGGGGTCAAAAGGTGCAAATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTATATCATATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAATTTGATGAGTCTGACAGCCAAGCTCAATCATCATCGAGATCTGGTCCATGGAGGAAGATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACGTACAAGAACTTTGAAATTGTCAACGATTATCAAGTTCCCGGGATGGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTCGATTGTGAATCAGAAACACCAGAAGGGTCTGATACATCTGCAAATGATCATCAACCTGCTCAAGGAAGCTTTTTAAAGCTCTTGCCACCCAAGTTAGAGGTATCTCATCGCGACAAGAATCTTCCTCCCAGGTCCTAA 1686 0.4021 MDSARSWLQKFQPRDKTRAAGKKKEEDSNGGNQDSNEAAVDEALLSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETILAIESIHKHNYIHRDIKPDNLLLDRYGHLKLSDFGLCKPLDCSTLEEKDFSVGQNVNGSTQNEERTTPKRSQQEQLQHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKTYLKFPEEARLSPEAKDLISKLLCNVNQRLGSKGANEIKAHPFFKGVEWDKLYHMEAAFIPEVNDELDTQNFEKFDESDSQAQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKQSKPKRPTIKSLFDCESETPEGSDTSANDHQPAQGSFLKLLPPKLEVSHRDKNLPPRS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02471 561 SMART serkin_6 122 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02471 561 FunFam Non-specific serine/threonine protein kinase 93 205 - -
Pumo3g02471 561 Coils Coil 64 84 - -
Pumo3g02471 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 472 - -
Pumo3g02471 561 FunFam Non-specific serine/threonine protein kinase 319 438 - -
Pumo3g02471 561 FunFam Non-specific serine/threonine protein kinase 206 273 - -
Pumo3g02471 561 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pumo3g02471 561 CDD STKc_NDR_like 120 484 - -
Pumo3g02471 561 SMART pkinase_C_6 421 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pumo3g02471 561 Gene3D Phosphorylase Kinase; domain 1 120 449 - -
Pumo3g02471 561 Gene3D Transferase(Phosphotransferase) domain 1 206 438 - -
Pumo3g02471 561 Pfam Protein kinase domain 123 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02471 561 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674|GO:0005524|GO:0006468
Pumo3g02471 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Pumo3g02471 561 MobiDBLite consensus disorder prediction 501 515 - -
Pumo3g02471 561 CDD MobB_NDR_LATS-like 56 117 - -
Pumo3g02471 561 MobiDBLite consensus disorder prediction 547 561 - -
Pumo3g02471 561 MobiDBLite consensus disorder prediction 501 561 - -
Pumo3g02471 561 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Pumo3g02471 561 MobiDBLite consensus disorder prediction 9 31 - -
Pumo3g02471 561 MobiDBLite consensus disorder prediction 1 37 - -
Pumo3g02471 561 SUPERFAMILY Protein kinase-like (PK-like) 95 473 IPR011009 -
Pumo3g02471 561 MobiDBLite consensus disorder prediction 521 536 - -
Pumo3g02471 561 MobiDBLite consensus disorder prediction 283 304 - -
Pumo3g02471 561 ProSiteProfiles Protein kinase domain profile. 122 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02471 Pumo-Chr3 37550125 37558597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02471 1 554 AGC Kinase Gene Family AT3G23310 75.045 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Pumo3g02471 Pkinase 5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02471 K08790 - gmx:100779528 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02471 3 37550125 37558597 Pumo5g02876 5 76043403 76048893 PCT