Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02468 ATGGAGGAAGACGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGACATCGAACGCGACGTTTTGGAAAAGGCTACTAGGAATGATTCAGTGACCGTTACTGAAGCCGACAGTAGCGCCAAGGAAGAATGTTCTGATTTACCTGAAAATGTTGATGTTGATCCATCAGCTAAAGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTTCAATTTGAAATTGATGCGGTTGCCTCCACCGTTGAACGGTTGAGTAATGTTGAAAATAATGAAGAATGTAGTGATGTTGGTGAGGACGGGGAGGGGCGAGGGACTGCTGAGGGTGATTCCGATGACAATTCAAACCTTCAGCGTGTTCTTGCTGCCGATAGGCTGAGGAGCCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGGTTTTGAATTTGTCTGCAGATGATGCTTCCAAAAGCGCTGAGCATGAAGAATTGATCCTTAGTTTAGTTAGGGAAGAACGGAAATCAAAGAGGAAGGTTAAAGAGGATAAGAAATCGAACAAAAGCACTGGGAAGCGGCGTAAGAAAGTCTCATTTGATGATGATGTTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTATGAGCGCCGCATTCAACAACCTGAAACATCAACTTGTCATAATGCAGCCGAGGAAGAAAATGCTGGTGACCTTGCTTCTTCCAGTATTGAAAGAGCTGTCAGATCCATGTCTGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTGAAGCTGCACCAAAGCTTGATGCACCCACTTTTCCTTTTCGCAGACTCAAGAAACCCCTACAATCTTCCAAACCTCTAGAGAGAGATGTGGAGCTGAATAAAGATTCAAAAAGGAAAAAGAGGCGGCCTCTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTGCGAGGATACACATCTGGAAGAAAGCGAAAACGCGAATGGTTGCTTGGATACTTCCAGTTGTGAAAATTTAGAAGAACAAGATGTTGAACTTGATGATCATGAACCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAATATATTTGAAGCTCTGTTTGACTATCAAAAGGTCGGTGTTCAGTGGATGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGACTTGGTAAAACTGTCCAGGTCTTATCATTTCTGGGTGCATTGCATTTTAGTGGCATGTACAAACACAGCATTATTGTCTGTCCAGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTACTCCAAGAAAGAAGCGAGCTAAATCTGAAGAAACAGACTATGAAAGCAATAGTTCAAGTGACAGTGATTATGAGAAAAGTTTGCCATCTAAAAATACAAGAAAATGGGAATCCCTGATAAATCGTGTCGTGAGATCGGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGACCAGTTGATTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAGAGTAAGGAATCCAAATGCTGAAGTTACCCTGGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGACAGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCTGTTCCTATATCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTACTAGAAAGGGATCATGCCTTCAATAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACACAACAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATATATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGCTTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACGAATCTTACAGGTGCAAATAGGGTGATCATCTTTGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATCGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTATTCACACTTAATGTGGATGGAGAAGCTGGGTCAACTGAAACTTCAAATATTTTCAGTCAAATATCTGAAGAAGTAAATGTCATTGGGACACATAAAGAAAACAAGGATAAACATAGCCCAACTGCTGAAATGGATTCTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGCTCTTTAAGAGGAAAGGGGAAAGAGAAGGTTGAACATAGTAATGGGGTTGATGAAGAAACAAATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATAAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACTTCAGTCACGAATGCTCCGAAGCCATGATAGCGTATCTGTTCCGACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCGTCATCTGTCAAGCGGAAGTTTGGATCAACTGTGAATCCCCAGTTGGTAAATAATAGCAAAGCATCTGACGAATTACCCAGCAAAGGAACTAACAAGATAAATGGATTTGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCCGCTGAAATTTTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATCGCTGCTGGGCTTGAACATCAGTTTGGTATGTCGTCAAGTTCCACTAATCAAGCAAGATCTGTAGATGTTAGACCTTCTAGGGCTACTGAAAATTCATCTGTACAACCTGAAGTATTGATTCGGCAAATCTGTACTTTTATACAACAGCGAGGTGGTAGTTCTGATTCAGTCAGCATAGTTCAGTATTTCAAGGACCGTATTCCCTCAAAAGATCTTGCTCTGTTCAAGAATCTGTTGAAGGAAATTGCGACTCTGCATAAAGGATCGAATGGATCCTATTGGGTTCTGAAACCAGACTATCAATTTTGA 3675 0.419 MEEDEDRILLSSLGVKSANPEDIERDVLEKATRNDSVTVTEADSSAKEECSDLPENVDVDPSAKAKAELHQKLRAVQFEIDAVASTVERLSNVENNEECSDVGEDGEGRGTAEGDSDDNSNLQRVLAADRLRSLKKTKAQLEKEVLNLSADDASKSAEHEELILSLVREERKSKRKVKEDKKSNKSTGKRRKKVSFDDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGYERRIQQPETSTCHNAAEEENAGDLASSSIERAVRSMSEAARSRPTTKLLEPEAAPKLDAPTFPFRRLKKPLQSSKPLERDVELNKDSKRKKRRPLPGRKWTKRVSCEDTHLEESENANGCLDTSSCENLEEQDVELDDHEPSYVTLEGGLKIPDNIFEALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKHSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSTPRKKRAKSEETDYESNSSSDSDYEKSLPSKNTRKWESLINRVVRSESGLLITTYEQLRILGDQLIDIEWGYAVLDEGHRVRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFNNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGEAGSTETSNIFSQISEEVNVIGTHKENKDKHSPTAEMDSEDVAVGNDDKSERGSLRGKGKEKVEHSNGVDEETNILKSLFDANGIHSAMNHDLIMNAHDEEKIRLEEQASQVAQRAAEALLQSRMLRSHDSVSVPTWTGRSGTAGAPSSVKRKFGSTVNPQLVNNSKASDELPSKGTNKINGFAAGASAGKALSSAEILAQIRGNQEKAIAAGLEHQFGMSSSSTNQARSVDVRPSRATENSSVQPEVLIRQICTFIQQRGGSSDSVSIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPDYQF 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02468 1224 Coils Coil 124 151 - -
Pumo3g02468 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 408 607 IPR014001 -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 307 325 - -
Pumo3g02468 1224 Gene3D - 367 656 IPR038718 -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 173 193 - -
Pumo3g02468 1224 CDD SF2_C_SNF 739 864 - -
Pumo3g02468 1224 Gene3D - 663 956 IPR027417 -
Pumo3g02468 1224 Pfam Helicase conserved C-terminal domain 746 853 IPR001650 -
Pumo3g02468 1224 CDD CSB_WHD 1154 1223 - -
Pumo3g02468 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 903 IPR001650 -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 1044 1066 - -
Pumo3g02468 1224 FunFam DNA excision repair protein ERCC-6 664 942 - -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 45 59 - -
Pumo3g02468 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 657 IPR027417 -
Pumo3g02468 1224 Coils Coil 1007 1027 - -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 481 511 - -
Pumo3g02468 1224 Pfam SNF2-related domain 399 721 IPR000330 GO:0005524|GO:0140658
Pumo3g02468 1224 FunFam Protein CHROMATIN REMODELING 8 374 656 - -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 92 121 - -
Pumo3g02468 1224 SMART ultradead3 392 624 IPR014001 -
Pumo3g02468 1224 CDD DEXHc_ERCC6 396 606 - -
Pumo3g02468 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 160 1206 - -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 241 335 - -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 19 59 - -
Pumo3g02468 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 923 IPR027417 -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 937 979 - -
Pumo3g02468 1224 SMART helicmild6 770 853 IPR001650 -
Pumo3g02468 1224 MobiDBLite consensus disorder prediction 481 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02468 Pumo-Chr3 37516885 37524459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02468 696 907 RAD5 or RAD16-like Gene Family AT5G22750 30.233 2.89e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g02468 SNF2_N 4.5e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02468 K10841 - gmx:100820025 2167.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02468 3 37516885 37524459 Pumo3g02468 3 37516885 37524459 ECH