Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02462 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCCGGGTTTCGGTTTTACCCGAGTGATGAAGAGTTGGTCCTTCATTACCTCTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGACTTGCACACGTGCGAGCCATGGCAACTCCCAGAGGTGGCTAAGCTTAATGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACGGGCTTCCGGACCAATCGCGCGACGACATCTGGCTATTGGAAAGCAACAGGGAAGGATCGTACGGTGTTTGACCCAGCCACGCGTGAGGTTGTAGGGATGAGGAAGACACTGGTGTTCTACAGGAACAGGGCTCCAAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGCTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGCAAAGCAGACAACAGTGCCAAACTCAGCCCATACGAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACAAACCAAACCACAACAATTGGGTATAACCAACTTGCCACTTTCTCTTCGTCAATGGCAACCCATCATCATAATAATAATATTCCAAATTACCAAAGCCAAAACAACAACTCCTTGATGAGTCTCCTTCAGTTCTCTAGGGATACAAATACCAATAACTCTAGCACCATTACTCAAATTAGTCCCAAATGTGATGATGGATATGGGTTCTTATGGGACATGGACCTCGAAGAAAATAACTTCAATGATGGCGTGGCATCAAACTTGGACGCAATGAGATTCGAGGTTGATAATAATAATAGTGTGGTCTTGTTATGA 864 0.4583 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNSAKLSPYESTVPSLTLASSSPTNQTTTIGYNQLATFSSSMATHHHNNNIPNYQSQNNNSLMSLLQFSRDTNTNNSSTITQISPKCDDGYGFLWDMDLEENNFNDGVASNLDAMRFEVDNNNSVVLL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02462 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 226 - -
Pumo3g02462 287 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Pumo3g02462 287 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Pumo3g02462 287 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Pumo3g02462 287 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02462 Pumo-Chr3 37457345 37462242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02462 6 246 NAC Transcription Factor Family AT1G56010 42.745 7.43e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo3g02462 NAM 8.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02462 - - gmx:100783645 530.791