Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02460 ATGCATATAGGTCAGACAGATACAGCTTCTGTGAAATGTCTGATCAACAGCATTTCTCGGTTCATTCATCTGGTTTCATGCCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAACCAGTGCTTGATGACGTTATGGATTACCAAATCCCTTCAGATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATATGCGGGTTAATGAAGCTAGAGATTTCATTGAAAAATGGATTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAGGTGGGACATTGCTGATCAAGTTACAGAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGCATCGGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTTTCAAGAAGGAAATGGCAATGGTCTACATAGAAGAAGCACTAAGAAACCAAAGAGATAATATTGAACTTTGCAAGGAGCATCTCAAGGAAATTATTGAGTTACTTAATTTGACATCAAATCAGGAGCTCTTAAGAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAAGGGGACTTGGAAGAACTTAATGAAATTGTGATTCTTGTCCGTAGTTTGCGTGATTATGTGATGAAAACTGAGTATCCTGTAGTCAAGAGTGGTCTCTCAATCCCTCCATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTCATCGTGGCTTCAGGTCAAACGTATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGTCAGATACTTACTCATACAAATCTCATTCCTAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTCTGAGCACAATAAATCTGCCTGTATCACATCCCCCTCAGACCATGTATTGCCTCAAGATTTAACTCATGATTGTTGTGTTGAGTCTTTACCTATTAGCAATTCCATTTCAAGATCATCTCTTGAAACTGAAAATGCATTTGAAAAGCAAAAGGGTGATAACTCTTTTAGATTATGCGGAGAATACAATGGATGCCAGAGTGGAGCAACTGAAAAGTGTGAACAACAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCACATGCAGTTTCGAAAGAGGTGTCAGGGATATCCAATAAACATCAAAATGTGAAGGTGCTGTCTGGAGAAATCACAAAGGTGTGTCCTCCTTCTTCTGGTAACAAACAATCAGGGATATCTCCTTGGTTATCTGGAACCCAATTGCAAAACCCTGGATCAAATGTGGGAGTGTTGGAGAATGGAAATAATAATAATAATAGTCATTCAAGATTTGATTCCCATCTTGTTTTCAACTCCGGATTGGATGAATTGACCACCTCATCTCATGTCATTAGATTGGTTGAAGACCTTCACAGCCAATCAATTGAAACGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTGCTTTCACTGCTATATTCAGACTTGCAGGTAACACAAGAGCATGCTGTTACAGCTCTGCTGAATTTATCAATTAATGAAGACAACAAGGCCATGATCATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTAAGGACAGGAAATGATAGTGCCAAGGAGAATTCTGCGGCAACTATATTCAGCCTTTCAATAATTGAGAACAATAAGGCAAGAATTGGCCGTTCTGGAGCAGTTAAAGCTTTAGTGGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTCTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCGGTGAAGTTTCTGGTTCGGTTAATGGACCATGCTGAAGGAATGGTTGATAAGGCTGTTGCTCTTTTGTCGAACCTGTCAACAATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGCATCCCCTTACTAGTTGAAATTGTTGAGTATGGTTCACAGAGGGGAAAGGAAAATGCTGCCTTCATTCTCTTGCAATTATGCCTTCATAGCTCTAAGTTCTGTACTCTGGTTTTGCAAGAAGGAGCTGTCCCTCCCCTAGTTGCATTGTCAATATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGTAATCAGCGGGAAGCAGCTGCTACTGGGAAGGGGAAATCATGA 2376 0.4061 MHIGQTDTASVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDYQIPSDVNLCKECEELDMRVNEARDFIEKWIPKMSKIHSVLQGGTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQHYIQELQCFKKEMAMVYIEEALRNQRDNIELCKEHLKEIIELLNLTSNQELLRESIAVEKERLNAEVNKMKGDLEELNEIVILVRSLRDYVMKTEYPVVKSGLSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQILTHTNLIPNYTVKAMIATWCEENNVKLSGNSEHNKSACITSPSDHVLPQDLTHDCCVESLPISNSISRSSLETENAFEKQKGDNSFRLCGEYNGCQSGATEKCEQQSPYTHSRSESFSSSISSTDCAHAVSKEVSGISNKHQNVKVLSGEITKVCPPSSGNKQSGISPWLSGTQLQNPGSNVGVLENGNNNNNSHSRFDSHLVFNSGLDELTTSSHVIRLVEDLHSQSIETQTAAAEELRLLTKHNKENRIIVGQCGAVMPLLSLLYSDLQVTQEHAVTALLNLSINEDNKAMIMEAGAIEPLIHVLRTGNDSAKENSAATIFSLSIIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDHAEGMVDKAVALLSNLSTIPEGRLEIARERGIPLLVEIVEYGSQRGKENAAFILLQLCLHSSKFCTLVLQEGAVPPLVALSISGTPRAKEKAQQLLSHFRNQREAAATGKGKS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02460 791 Coils Coil 189 216 - -
Pumo3g02460 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Pumo3g02460 791 SMART arm_5 657 696 IPR000225 GO:0005515
Pumo3g02460 791 SMART arm_5 616 656 IPR000225 GO:0005515
Pumo3g02460 791 SMART arm_5 697 737 IPR000225 GO:0005515
Pumo3g02460 791 SMART arm_5 534 574 IPR000225 GO:0005515
Pumo3g02460 791 SMART arm_5 575 615 IPR000225 GO:0005515
Pumo3g02460 791 FunFam RING-type E3 ubiquitin transferase 491 783 - -
Pumo3g02460 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
Pumo3g02460 791 PANTHER U BOX DOMAIN-CONTAINING 34 778 - -
Pumo3g02460 791 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Pumo3g02460 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Pumo3g02460 791 SUPERFAMILY ARM repeat 504 777 IPR016024 -
Pumo3g02460 791 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Pumo3g02460 791 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Pumo3g02460 791 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Pumo3g02460 791 Pfam Armadillo/beta-catenin-like repeat 619 655 IPR000225 GO:0005515
Pumo3g02460 791 Pfam Armadillo/beta-catenin-like repeat 534 573 IPR000225 GO:0005515
Pumo3g02460 791 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Pumo3g02460 791 SUPERFAMILY RING/U-box 239 315 - -
Pumo3g02460 791 Gene3D - 495 786 IPR011989 -
Pumo3g02460 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Pumo3g02460 791 CDD RING-Ubox_PUB 242 294 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02460 Pumo-Chr3 37399153 37403695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02460 7 791 U-box Gene Family AT3G54790 54.717 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02460 - - gmx:100800949 1415.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02460 3 37399153 37403695 Pumo3g02460 3 37399153 37403695 ECH