Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02457 ATGCCGTCGCTACTCTCTCCGGGCAAAATCCACTGCCTCGAGGTGGAGAATTTCAAGTCCTACAAGGGCTTCCAAGTTATAGGTCCCTTCTACGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGCAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTTGGCGTCCGCACCGGCCAGCTCCGTGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAGGAGCAGAAAGGTCGCAGAGCCTTCGTTCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAGGTTCACCCGCACCATCACCAGCGCCGGCGCCAGCGAGTACCGCATCGACGACTCCCTCGTCAATTGGGAGACCTACAACAACCGGCTCAAGTCCCTCGGCATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAGTCCATTGCGTCGAAGAATCCCAAAGAGCTCACTGCGCTGGTGGAGCAGATATCCGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGTTTGAGGAGGCAAAAGGTGCCGCTGAGGAAAAATCAGCGCTTGTTTATCAGAAAAAGAAGACAGTGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCAACAAGAACTGAAATCTATGAAGGGAGAACATTTCTTGTGGCAGTTGTTTAATATACACAACGATTATGCTGAAACAATAAAGGATCTTGAAGATGAGGAAAAAAGTCGTGAAGGTGTTGTTGAAGAACTAGAATATTTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGATTGTACTACGTGAAAAGAGAATTGCTGAGAAAAGCAACAAGCTTGACAAGAGTCAACCTGAACTTCTGAAGTTAAAGGAGGAAATGACTCGTATCACTTCAAAAATTAAAAAAGGGAAGAAAGAGCTTGATAAAAAAAAGGTTGAACGGACGAAGCATGATGCTGATATAACATTACTACAGAATGACATCCAGGATCTTACAGCAAAAATGGCAGACCTTCAGGAAAAGGGACGAGATGTTGATGATGAGCTTGATTTGCAAGGCAATGACTTGGAAGAATATTTTCGCATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAGGAGCTTCTAGATAGGAAACTAAACGCTGATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGCGGGCAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAAAATAAAGTTGGCCTTGAAAACTTGAAAAAAGAACTACGCGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATTTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACGCAGAAGAAGTATAACCTAGCTGTTACTGTTGCAATGGGTAAATTTATGGATGCAGTCGTAGTTGATAATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACCGCAAAACTGGTTTTTGATGTGATTCAATATCCTTTTTCTCTAGTGGCTACTTCGAAGAATTTGGTTCTGATTGTGTTTGCAAATTTGTTATTTGAATTTTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGCGGTGAGAGGTTTAAAGTTGTAACTGTGGATGGAATTCTGTTGACAAAATCCGGCACAATGACTGGGGGCACTAGTGGTGGAATGGAAGCAAGGTCGAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAATTGGAAGAGCTAGGATCAATAAGAGATATGCGCCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTCGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTGCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGAACTGCAGAAGTTAAATGATGCTGTTAACAAGAGCAATGCAGATGTACGTAAGCTTGAGAGGAGGATAAATGAAATTACTGATAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCAAGAATTGGAAGCTTCTCTTGGTTCTTTAGAGAAAGATTTAAAATGTGTACAGGACAGAGAGGCCGCAGCAAAGTTAGTAGCCGAGAATGCTACTGAAGAGATTAATCAGCTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCAGCGACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAGTGTGAACTAGAACAGATTAGCCTCCCAATCATACCGGATCCTATGGATACTGGTAGCTCAGTACCAGGTCCATCTTTTGACTTTGATCAACTAAATAGGGCACTGAAAGATAGGAGACACTCAGACACGGATAAAATTGAGATAGAGTTTAAGCAAAAAATGGATGCCTTGATATCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAAGCTCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCACTTGTTCATGGATGCTTTCACCCATATATCTGGCAATATAGATAAAATATACAAACAACTTACAAAGAGCAACACACATCCACTGGGGGGAACAGCATACCTAAACTTGGAAAATGATGATGATCCATTTCTTCATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGTTATAAGCCTTCACCGTTTTTTATATTGGACGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCAAGGACTAGTCAGGATGCTGATGGTGGAAATGGTTTTCAGAGTATTGTGATATCACTGAAAGACACCTTTTATGACAAAGCCGAAGCATTAGTTGGGGTTTACAGAGACTCTGAAAGAGGCTGTTCGAGAACTCTCACATTTGATTTGACTAAATACCGAGAGTCCTAA 3726 0.4208 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIRFTRTITSAGASEYRIDDSLVNWETYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEAKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKGEHFLWQLFNIHNDYAETIKDLEDEEKSREGVVEELEYFENEASKKKKEQAKYLKEIVLREKRIAEKSNKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERTKHDADITLLQNDIQDLTAKMADLQEKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDFRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLVFDVIQYPFSLVATSKNLVLIVFANLLFEFFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMRLKESEASGKISGLEKKIQYAEIEKRSIEDKLANLSQEKKTIKERIECISPELQKLNDAVNKSNADVRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQSIAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELEASLGSLEKDLKCVQDREAAAKLVAENATEEINQLKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQISLPIIPDPMDTGSSVPGPSFDFDQLNRALKDRRHSDTDKIEIEFKQKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEREKTQRFNEVKQRRYHLFMDAFTHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02457 1241 Coils Coil 342 369 - -
Pumo3g02457 1241 SUPERFAMILY Smc hinge domain 481 706 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pumo3g02457 1241 Coils Coil 170 190 - -
Pumo3g02457 1241 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Pumo3g02457 1241 CDD ABC_SMC1_euk 1120 1235 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Pumo3g02457 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1182 IPR027417 -
Pumo3g02457 1241 Coils Coil 398 446 - -
Pumo3g02457 1241 Coils Coil 454 502 - -
Pumo3g02457 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 929 1224 IPR027417 -
Pumo3g02457 1241 Coils Coil 699 719 - -
Pumo3g02457 1241 Gene3D - 591 683 - -
Pumo3g02457 1241 PIRSF SMC 8 1237 IPR024704 GO:0005524|GO:0016887
Pumo3g02457 1241 Coils Coil 198 228 - -
Pumo3g02457 1241 Coils Coil 853 957 - -
Pumo3g02457 1241 Gene3D - 8 230 IPR027417 -
Pumo3g02457 1241 Gene3D - 931 1240 IPR027417 -
Pumo3g02457 1241 Coils Coil 816 836 - -
Pumo3g02457 1241 Coils Coil 251 271 - -
Pumo3g02457 1241 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Pumo3g02457 1241 Coils Coil 1031 1051 - -
Pumo3g02457 1241 Coils Coil 307 327 - -
Pumo3g02457 1241 Gene3D - 479 590 - -
Pumo3g02457 1241 Coils Coil 775 802 - -
Pumo3g02457 1241 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1241 - -
Pumo3g02457 1241 Pfam SMC proteins Flexible Hinge Domain 517 656 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pumo3g02457 1241 Pfam RecF/RecN/SMC N terminal domain 10 1222 IPR003395 -
Pumo3g02457 1241 Coils Coil 733 767 - -
Pumo3g02457 1241 SMART SMC_hinge_2 517 657 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02457 Pumo-Chr3 37351102 37363396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02457 8 114 Structural Maintenance of Chromosomes family AT5G61460 33.333 1.12e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02457 K06636 - gmx:100785315 2223.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02457 3 37351102 37363396 Pumo3g02457 3 37351102 37363396 ECH