Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02454 ATGGGGAGAGCTCCTTGCTGCGAGAAAATGGGGTTGAAGAAAGGATTATGGACTCCAGAGGAAGATCTGATTCTCATCAATCATATCAACACACATGGCCACAAAAATTGGCGTGCTCTACCCAAACAAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAATTATTTGAGGCCAGATATTAAACGGGGCAACTTTACCAGAGAAGAAGAGGACATGATAATCCAGTTGCATGAAACGTTGGGGAACAGATGGTCAGCCATAGCAGCAAAATTACCGGGGCGCACAGACAACGAAATAAAGAATGTGTGGCACACCCACTTGAAGAAGAAGAGGCTGCCCCAACAAGACACAGTCAGAAAACGACAAAAAAAGCACCAAACCACCAAGACAGAGGAGAAGCCGGAGTGTGTAAGCAGTGACGTGTCAACCCTTACCACTCAAGGCGTGTCCATGAATAACAACACTACTGCTGAATCGCTCGACGATGATTTCTGGTCTCAGGTTCTCTCAGCTGATCATTCCGATCACACCACCGCCACGGCTGATCACAAGTTCCAATTTTCACTCCCTCCGTACGATAATGTCGACTATTGGTTTGATGTTTACATGGGAACGCAGGTGTTGCCCACTTAA 648 0.4722 MGRAPCCEKMGLKKGLWTPEEDLILINHINTHGHKNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDMIIQLHETLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKRLPQQDTVRKRQKKHQTTKTEEKPECVSSDVSTLTTQGVSMNNNTTAESLDDDFWSQVLSADHSDHTTATADHKFQFSLPPYDNVDYWFDVYMGTQVLPT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02454 215 CDD SANT 69 112 IPR001005 -
Pumo3g02454 215 FunFam MYB-related transcription factor 13 66 - -
Pumo3g02454 215 Gene3D - 69 115 - -
Pumo3g02454 215 CDD SANT 17 61 IPR001005 -
Pumo3g02454 215 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo3g02454 215 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo3g02454 215 MobiDBLite consensus disorder prediction 115 147 - -
Pumo3g02454 215 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 165 - -
Pumo3g02454 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo3g02454 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo3g02454 215 FunFam Transcription factor MYB15 68 141 - -
Pumo3g02454 215 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo3g02454 215 Gene3D - 13 66 - -
Pumo3g02454 215 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo3g02454 215 MobiDBLite consensus disorder prediction 124 141 - -
Pumo3g02454 215 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Pumo3g02454 215 SMART sant 13 63 IPR001005 -
Pumo3g02454 215 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02454 Pumo-Chr3 37320872 37325818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02454 1 207 MYB Transcription Factor Family AT2G31180 53.191 1.58e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g02454 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02454 K09422 - gmx:106794951 313.538