Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02449 ATGGATTTTGATTCATCTTTCTTCCAGTACCAAAACTTCAACACTTCCTTTGTAAATTCCTCTGTTTGTGCAGAATCATTCCCTTGGGAGGACTTTCTCTTCTTCAATGAAGAAAACACCACCCTTAACCCCTTCACAATCACTGACCACTCCTCATCACAAATCAAGGAATCATCCTCAGATTCCAACTCTTCAGGCTCCTTGGTCAGCACTGAGTCACAATTAGAAGTGTCATCCAATTTAACTCATGCAAGCCATCATGATGGCCAAGTACTCAAAGAAACACATGCAACACCACCACCAAAGGAAGGTAACAAAGAGAAGAGACCCTTCAGAGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAAATAAGAGACTCCACAAGAAATGGGGTTAGAGTATGGATTGGCACATTTGACACAGCAGAGGCAGCAGCACTGGCTTATGACCAAGCAGCTTTGTCCACAAGAGGGTCCATGGCAGTGCTGAATTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGGCCAACAAGCCATTGGAAGATGGTTCCTCTCCAGTGCTGGCACTCAAGAGGAAACACACCATGAGAAGAAAATCCAAAGCCACCAACAAAAAGACCAAAAGGGACCATGTAGAAAATGTGCTTTCACAAAATGTGCTGGTGTTGGAGGATCTGGGTTCTGAGTACTTGGAGCAACTTCTCAGCTTGACTTCTTCTGATGTCCTTTCTCAGTAA 750 0.448 MDFDSSFFQYQNFNTSFVNSSVCAESFPWEDFLFFNEENTTLNPFTITDHSSSQIKESSSDSNSSGSLVSTESQLEVSSNLTHASHHDGQVLKETHATPPPKEGNKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMANKPLEDGSSPVLALKRKHTMRRKSKATNKKTKRDHVENVLSQNVLVLEDLGSEYLEQLLSLTSSDVLSQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02449 249 PANTHER DNA-BINDING DOMAIN 65 240 IPR044808 GO:0003700|GO:0009873
Pumo3g02449 249 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Pumo3g02449 249 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Pumo3g02449 249 FunFam Ethylene-responsive transcription factor 2 109 169 - -
Pumo3g02449 249 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Pumo3g02449 249 MobiDBLite consensus disorder prediction 52 114 - -
Pumo3g02449 249 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Pumo3g02449 249 MobiDBLite consensus disorder prediction 52 86 - -
Pumo3g02449 249 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Pumo3g02449 249 Coils Coil 247 249 - -
Pumo3g02449 249 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Pumo3g02449 249 MobiDBLite consensus disorder prediction 87 110 - -
Pumo3g02449 249 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Pumo3g02449 249 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02449 Pumo-Chr3 37276140 37277307 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02449 106 239 AP2-EREBP Transcription Factor Family AT3G23240 64.964 9.02e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g02449 AP2 2.4e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02449 3 37276140 37277307 Pumo3g02449 3 37276140 37277307 ECH
Pumo5g02852 5 75762681 75763707 Pumo3g02449 3 37276140 37277307 PCT