Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02447 ATGGAGGGTGGAAGATCATCGGTTTCAAATGGAAATGCTGAGGTTCGGTATAGAGGGATTAGAAGAAGGCCATGGGGCAAGTTTGCTGCGGAGATTCGTGACCCTACAAGGAAAGGGACAAGGATATGGCTTGGAACCTTTGACACTGCGGAACAAGCTGCACGAGCTTATGATGCTGCGGCTTTTCATTTTCGCGGTCACAGAGCCATTCTCAACTTCCCAAATGAGTACCAATCTTCTAATCCAAACTTTTCTTTGCCTATGCCTCTAACTGTGCCTCCTCCTTCTTCTTATTCTTCTTCCTCTGGTGATGATAACCACCTTGCGAGACCTGGTTTTTCTGGAGAAATAATGCAAGGTCATGATGACACTTTTGAGTTGGAGTACTTGGATAATAAGTTGCTCGAGGAACTCCTTCAGATGCAAGAAAACAGACACCTCTACAAGTGA 450 0.4533 MEGGRSSVSNGNAEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSSNPNFSLPMPLTVPPPSSYSSSSGDDNHLARPGFSGEIMQGHDDTFELEYLDNKLLEELLQMQENRHLYK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02447 149 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Pumo3g02447 149 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Pumo3g02447 149 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Pumo3g02447 149 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Pumo3g02447 149 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Pumo3g02447 149 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Pumo3g02447 149 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Pumo3g02447 149 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Pumo3g02447 149 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Pumo3g02447 149 MobiDBLite consensus disorder prediction 92 112 - -
Pumo3g02447 149 PANTHER DNA-BINDING DOMAIN 12 140 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02447 Pumo-Chr3 37257643 37258268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02447 12 146 AP2-EREBP Transcription Factor Family AT3G23230 53.333 7.02e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g02447 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02447 - - gmx:100779173 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02851 5 75743785 75744444 Pumo3g02447 3 37257643 37258268 PCT