Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02446 ATGACTTCTCCTTTCTTTGAGAACCCAGACTGGGACATGTCGCAGGATGAGTCTTCAGAGATTTTGTTTGAATCATTGTCAAGCAATGCTGTTGATGACCCTATGCACGATTCTCTTTCCTTCGATATGGTTGATTTCTCCATGGCACCAACAGAAGAAAACCACAACGAGGCAAAGCAATTGGAGGTGAAATCTGAAGTGCAGAATAAGGAAAGGTCATATATTGGTGTGAGGAAAAGGCCTTGGGGAAAATATGCAGCAGAGATTAGAGACACAACGAGGAATGGCACTAGGGTTTGGCTTGGAACCTTTGATAGTGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGTGATAATGCTGTACTCAATTTTCCGGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATGAAATATAGCTGCTTCAATGGGTCTTCTCCAGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCATCAAAAGGTAAAAAGTGTAAAGGGAAAGAGACTTCACCAGAGGATCCAATACAACGTGTGGTGGTGTTGGAGGACTTGGGAGTTGACTATCTAGAGCATCTTCTAAGCATATCTGATCAAAGTGCAAGTGCAAGCCCTAGCTACTTCAACTAA 654 0.4343 MTSPFFENPDWDMSQDESSEILFESLSSNAVDDPMHDSLSFDMVDFSMAPTEENHNEAKQLEVKSEVQNKERSYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGDNAVLNFPVKRVKESLQEMKYSCFNGSSPALALKERHCIQRKLSSKGKKCKGKETSPEDPIQRVVVLEDLGVDYLEHLLSISDQSASASPSYFN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02446 217 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Pumo3g02446 217 PANTHER DNA-BINDING DOMAIN 38 206 IPR044808 GO:0003700|GO:0009873
Pumo3g02446 217 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Pumo3g02446 217 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Pumo3g02446 217 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Pumo3g02446 217 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Pumo3g02446 217 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Pumo3g02446 217 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Pumo3g02446 217 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Pumo3g02446 217 FunFam Ethylene-responsive transcription factor 2 72 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02446 Pumo-Chr3 37229056 37230288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02446 56 210 AP2-EREBP Transcription Factor Family AT3G23240 54.777 8.43e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g02446 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02446 K14516 - gmx:100812017 313.538