Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02445 ATGAAGCAACAGACAGCACAGCAGCTAGTTGTCTACAAGCCTAGTAACATGGCTTCCCCTTTCTTTCAGAACACATATTGGGACAAGATGCAGGAGCCTTCAGAAATCTTGTTCGAATCACTGTCAAGCAATAATGCTGTTCTTGACCCTCTCCACGATTCTCTTTCCTTCGATATGGTTGACTTCTCCACACCACCAACACAAGGAAACCACAACAACGAGGCAAAGCAATTGGTGGTGAAATCTCAAGTGCAGAATAAGGAAAGGTCACATATCGGTGTGAGGAAAAGGCCTTGGGGGAAATATGCAGCAGAGATCAGAGATACAACTAGGAATGGCGCAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAGGCTGCTGCGTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCGTAATGCTGCACTCAATTTTCCGGTGAAAACGGTGGAAGAGTCTTTGCAAGAGATCCAATATAGCTGCTGCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATCATCAAAACGTAAAAAGTGTAAAGGGAAAGAGACATCACCAAGTGTGGTGGTGTTAGAGGATTTGGGAGTTGACTATCTAGAGCAACTTCTAAGCTTATCCGATCAAAGTGAAAGCCCTAGCTACTTCAACTAA 681 0.4493 MKQQTAQQLVVYKPSNMASPFFQNTYWDKMQEPSEILFESLSSNNAVLDPLHDSLSFDMVDFSTPPTQGNHNNEAKQLVVKSQVQNKERSHIGVRKRPWGKYAAEIRDTTRNGARVWLGTFDSAEAAALAYDQAAFSMRGRNAALNFPVKTVEESLQEIQYSCCNGSSPALALKERHCIQRKSSKRKKCKGKETSPSVVVLEDLGVDYLEQLLSLSDQSESPSYFN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02445 226 CDD AP2 93 149 IPR001471 GO:0003700|GO:0006355
Pumo3g02445 226 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Pumo3g02445 226 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Pumo3g02445 226 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Pumo3g02445 226 FunFam Ethylene-responsive transcription factor 2 90 150 - -
Pumo3g02445 226 Gene3D AP2/ERF domain 91 150 IPR036955 GO:0003700|GO:0006355
Pumo3g02445 226 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Pumo3g02445 226 PANTHER DNA-BINDING DOMAIN 56 218 IPR044808 GO:0003700|GO:0009873
Pumo3g02445 226 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Pumo3g02445 226 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02445 Pumo-Chr3 37166210 37167018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02445 72 219 AP2-EREBP Transcription Factor Family AT3G23240 54.194 6.58e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g02445 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02445 K14516 - gmx:100782036 320.472