Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02444 ATGACTACTTCCCCTTTCTTACAGAACCCAAATTGGAACATGTTGCAGGAGCCTTCAGAAATTCTGTTCGATTCATTCGGAAGCAATCCTGTTCGAGACACTGTCGGTCACGATTCACTGTCCTTCGACATGGTCGATTTCCCCACAGCACCCATGGAAGGAAACCCAAACAAGACAAAGCAATCGGTGGTGAAGCCTGAAGTGCAGAATAAGGAAAGGTCATACATAGGAGTGAGGAAAAGACCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACGAGGAATGGCACTAGGGTTTGGCTTGGAACCTTTGAGAGTGCTGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTGCTCAATTTTCCGGTCAAAACGGTCAAAGAGTCTTTGCAAGAGATGAAATATAACTGCTGCAATGGCTCTTCTCCCGCACTTGCACTCAAGGAGAGGCACTACATCAGAAGAAAATTGTCTTCAAAAGCTACGAAGTGTAGAGAGAAACAGGAACCAGAGGCACCAGCACCAAGTGTGGTTGTGCTAGAGGACTTAGGAGTTGAATATCTAGAGCAACTTCTCAGCATATCGGATCAAAGTGTAACTGTGTAA 636 0.4575 MTTSPFLQNPNWNMLQEPSEILFDSFGSNPVRDTVGHDSLSFDMVDFPTAPMEGNPNKTKQSVVKPEVQNKERSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVKTVKESLQEMKYNCCNGSSPALALKERHYIRRKLSSKATKCREKQEPEAPAPSVVVLEDLGVEYLEQLLSISDQSVTV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02444 211 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Pumo3g02444 211 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Pumo3g02444 211 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Pumo3g02444 211 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Pumo3g02444 211 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Pumo3g02444 211 PANTHER DNA-BINDING DOMAIN 56 203 IPR044808 GO:0003700|GO:0009873
Pumo3g02444 211 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Pumo3g02444 211 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Pumo3g02444 211 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Pumo3g02444 211 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02444 Pumo-Chr3 37106038 37106673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02444 72 210 AP2-EREBP Transcription Factor Family AT3G23240 61.151 1.56e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g02444 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02444 K14516 - gmx:100527364 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02444 3 37106038 37106673 Pumo3g02444 3 37106038 37106673 ECH
Pumo5g03830 5 88265760 88266539 Pumo3g02444 3 37106038 37106673 PCT
Pumo3g02444 3 37106038 37106673 Pumo5g02849 5 75715325 75716044 PCT