Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02442 ATGGCACTGAGCAAGAACCACTCCTACAACAACAAGCTTGGTTATGAAGCTCTCCCACCCATCAAAACCCAGGCTGGAACACTCCAACACCCACCACAACCTGCTTCCTCAGACTATGCTTTTCCCATATTTGTCATTGTTGTGCTCAGCATCTTGGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTTCTAACCAAATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCATCCTGCGAGCTCGGCACAACGAGGACCCCTTCATAGCATTCTCTCCTGCCATGTGGAACCGAGGGCTTGATGAGTCTATCATCAGAGAAATCCCAACGTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGACTGAGTTTAAGGAACATGATGTGCTGAAAGTTCTTCCCAACTGCAACCATGCTTTTCATTTGGACTGCATTGACATTTGGCTTCAGACCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGACCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGGGGAGAATCTGGAGCAGTAGTGCCACAGGTGCAACAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAACCACTCTAGTAGGAAGGTGGAGCACTTGCAACCAAGGAAGCGCCACCATGGTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAGTTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATTATACAACAAAACAGGCATCAGAATGAGGCTAGTGCTAGTGAGGATTGTAGTAGTAGCAGAGGTCGAAGAGCATTCTTCCCATTTTGCTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGTTTAA 1044 0.4473 MALSKNHSYNNKLGYEALPPIKTQAGTLQHPPQPASSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISILRARHNEDPFIAFSPAMWNRGLDESIIREIPTFQFIKGEEGEDQSVYGCVVCLTEFKEHDVLKVLPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGESGAVVPQVQQQERNDSRGSLAHRNHSSRKVEHLQPRKRHHGSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEDCSSSRGRRAFFPFCYGKGSKNAVLPLENDV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02442 347 SMART ring_2 132 173 IPR001841 -
Pumo3g02442 347 CDD RING-H2_EL5-like 132 174 - -
Pumo3g02442 347 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pumo3g02442 347 Pfam Ring finger domain 132 174 IPR001841 -
Pumo3g02442 347 MobiDBLite consensus disorder prediction 227 257 - -
Pumo3g02442 347 PANTHER RING-H2 FINGER PROTEIN ATL16 21 344 IPR044600 GO:0016567|GO:0016740
Pumo3g02442 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
Pumo3g02442 347 SUPERFAMILY RING/U-box 109 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02442 Pumo-Chr3 37083068 37084242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02442 32 309 C3H Transcription Factor Family AT1G04360 43.689 4.87e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02442 K19041 - gmx:100809883 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02442 3 37083068 37084242 Pumo3g02442 3 37083068 37084242 ECH
Pumo3g02442 3 37083068 37084242 Pumo5g02846 5 75688237 75689442 PCT