Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02439 ATGAACAAATCCTCAGAAGCAGCTTCTCCTTCTTGCAGAAGCAGATCCAAGAAACCCAATCTCCGAAGCTCCAAATCTCAGGCGCCGAGCCCCGCTCAGTTCAGCTCCAAGACGCCGGAGAAGCCGCCGCAGAGAACCCGAAACCGTGGCGTCGCGCTCTCCGTCGAAGAAATCAAAAAGGCCGGCAAGCGCTTGCAGGATCGGAAGCAATGCACTGAAACGACGTCGTCGTCGTCGTCGTCGCTGACCAAAAGTTTCAGAAGGCAGATCTCACTTTGGCCTTCTTCTCCCAGTAAACCAAAGACTACTGAAGATGAATCCTCCAAGCTCCCCGAGAAGTATGAAATTTTGGACGAGTTCTTCAATCGGTTGGATACTTTGATCTCAATGCACCGTCTGAAAGGGTGGACTCCCACCTTTACTTCAATCAGTTCCAGGATTGAATCTTTAACTGACAGGAGGTTTACTCATGGTCATCTAGCCCAGTTGAAATTTATCTTGCCTGAGGCTATTGTTCTTAAGAAGCATCTGGTGCTTGATGAACGGACGAGTTGTATGAAGCCGGACATTCACATTTCTTTAGACCCTGCTGCGGTAGAGCCTGATGCGAAGTTGCCCCCTCCACGTGGGAGAGTGTCGCTGAAGAAGGTGTTTCGGGCACGGCTAACAGATTTCTGGGAATCTCATCCTGAGGATGATGAAATTCCAGAAGGAACATTGCCTGAGCCATTCAATCGCCCCAAGAAAGACAGTATTTTGGAAACTCGTCTCCCAACAAAATTGTCACCCTGCATGCGCTATAGTGACATTGTCAATAATGCAGAGTCTGCAAACTTAGATGAAAAATTATCAGTACATGAGCATCTGGCAGCACCTTCTCACATGGCGCCATCCTTTAGAGCGCGATTTTTTCAGAAATTTAAACAGAATGGAGCAGATGATGTACAGCAAAATTCTCCATTAGATTCATTACAACCCCTGGCTTTTCCAGATACAGAGTCAAGCCTGAAGGAAAATCCACCCTTTGAGGATACTGAATCTCATCTGAAAACAACTTCCCCAGCTAAATTGGCTTCAGAAGAGGCTAATAGTGAAAGTTGTCCAACAATTTGTGTTTCTTTGGAATCATCCGGTGCTCCCCCTGCTACTCCAAGCAAAACCATTGTGTACACAGAAAACAAAGATGGGTGTCTCGAGAGCATTGATGCCATGTCAACACCAGCAAGGAAAACAATTGAGTACACAGAAAACAAAGATGGGTCTCTAAAGAGCATTGATGCCATGTCAACTCCAGCTGAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCAAAAGACATTATTTGAACAAGTTAGCTAGGCGTCCACCTCGCTCAAGGTCATTGAAATTTGACACTCCATTGAAGAATAAGGACGTTCTGGATGAAGACAATGCTGGTGGCTTACCAATAGATGATGATATTTCTGACATCCTCCCAGAAAATCTTATCCAATCGATTAAAGAAAAGGAAAGAATGGCAATGGAGGAAAGAGACCCAGCTATCACACAAGCAAAGAAACGGAAAAAAAATATAGCTAGCCTCCCTAAGCTCTTTGACATGATTCGCGGCTTGCTTCGACAGCGGAATTGTATCACTAAAGCAGAGCTTGTAAGCAAGATAATCTCAAGCCGCTGTGATATTGTTGACAGAAGTGAAGTTGAAGAGCAGCTAAATTTGTTACAAGAATTAGCACCCGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTGCTATTATTCATAAATAAAATGTTAAGCCCTGAAACCATTCGAGCATCTCTTGAAGAAGCAACATAG 1863 0.4487 MNKSSEAASPSCRSRSKKPNLRSSKSQAPSPAQFSSKTPEKPPQRTRNRGVALSVEEIKKAGKRLQDRKQCTETTSSSSSSLTKSFRRQISLWPSSPSKPKTTEDESSKLPEKYEILDEFFNRLDTLISMHRLKGWTPTFTSISSRIESLTDRRFTHGHLAQLKFILPEAIVLKKHLVLDERTSCMKPDIHISLDPAAVEPDAKLPPPRGRVSLKKVFRARLTDFWESHPEDDEIPEGTLPEPFNRPKKDSILETRLPTKLSPCMRYSDIVNNAESANLDEKLSVHEHLAAPSHMAPSFRARFFQKFKQNGADDVQQNSPLDSLQPLAFPDTESSLKENPPFEDTESHLKTTSPAKLASEEANSESCPTICVSLESSGAPPATPSKTIVYTENKDGCLESIDAMSTPARKTIEYTENKDGSLKSIDAMSTPAELVSTPIRLMSATPALRSPKRHYLNKLARRPPRSRSLKFDTPLKNKDVLDEDNAGGLPIDDDISDILPENLIQSIKEKERMAMEERDPAITQAKKRKKNIASLPKLFDMIRGLLRQRNCITKAELVSKIISSRCDIVDRSEVEEQLNLLQELAPEWISEKQVSSGDLLLFINKMLSPETIRASLEEAT 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02439 620 MobiDBLite consensus disorder prediction 52 70 - -
Pumo3g02439 620 Gene3D - 493 620 IPR038090 -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 71 101 - -
Pumo3g02439 620 FunFam CDT1-like protein a chloroplastic 492 620 - -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 313 362 - -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 1 41 - -
Pumo3g02439 620 Pfam DNA replication factor Cdt1 C-terminal domain 502 594 IPR032054 -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 229 248 - -
Pumo3g02439 620 Pfam DNA replication factor CDT1 like 110 200 IPR014939 -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 313 332 - -
Pumo3g02439 620 PANTHER DNA REPLICATION FACTOR CDT1 6 619 IPR045173 GO:0003677|GO:0030174|GO:0071163
Pumo3g02439 620 SUPERFAMILY "Winged helix" DNA-binding domain 107 244 IPR036390 -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 1 109 - -
Pumo3g02439 620 CDD Cdt1_m 94 263 IPR014939 -
Pumo3g02439 620 SMART CDT1_2 110 242 IPR014939 -
Pumo3g02439 620 MobiDBLite consensus disorder prediction 346 362 - -
Pumo3g02439 620 CDD Cdt1_c 498 617 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02439 Pumo-Chr3 37062895 37066269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02439 84 620 Core DNA Replication Machinery Family AT3G54710 33.748 6.52e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02439 K10727 - gmx:100808801 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02439 3 37062895 37066269 Pumo3g02439 3 37062895 37066269 ECH