Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02438 ATGGGTAGCAACTTGCACCGACTGCTCAGAAGCTTCTGTTTGGGTACTGATTGGAAGTATGCCATCTTTTGGAAGCTCAAACATCGGGCTCGGATGATCTTGACATGGGAGGATGCTTACTATGACAATCCTAGTAGTTGTGACTCTTCCGAAAATAAGAGCTGCCAGAATACATTGGAGCAGATTGGCAGTGCTGATTTTTCGCATGATCCTCTAGGGTTAGCTGTGGCAAAGATGTCATATCATGTATATTCGTTAGGGGAAGGAATTGTTGGACAGGTAGCTGTTACTGGAAATCATCGGTGGATCTGTGTAGATAATCAAGTTACAAGTTCTGGCCCATCTTTTGAGTTTGCTGATGGGTGGCAATCTCAGTTTTCTGCTGGAATTAGGACCATTGTTGTTGTAGCGGTAGTCCCCCTTGGAGTTGTTCAACTTGGCTCTTTAAATAAACAGGTTGCTGAAGATATGGGGGTTGTAACCTGTATCCGGAGTCTCTTTTTGTCTACTCAAGATTACACAATAGGCCACGTTCCTAATCAAGTACAAAATAGTGTGAATTCTTCATATGTGCTGGATACAAAAACTTCAGAAAGCATGCCTGCTTACTTACAGGATACAGAGAAAACCATGAAGCATGAAGCACTAGATATTTTAATGCCCTTTCAATGTCCTGGGAAGAATTATTCACCTCATGCTGTTCATCAGAAAATGGCTGTTGATGTGGCCAAGCATGAGGTGCCTGAATTAAACACTGATGGAAGTTCCATTTTGCTTCAGTCAATTTCAAATATGACGAACGTGGAGCAGCAGAAATTTGTAGGGATGAGACCTGTAAATGAGAGGAAGTTTGAAGGGAACAATAGTAGCTGTGAAGATACAAGTTTGGAATCAGGAAAAAATGTTTCCTCATTTTTACACAATTTGGTTATCAATAATAATGGTGTCAATGATTTAGTATGTCCGTCAGAAAATGTCAGAATTGATTCTGTATCCTTCCCTTCAGACTTTCTTGATGCAGCTGTTTGTGAGAGTGATAAGTTTCATTATGTAGATATCAACCAAAAAGGAGTGTTGAATGTGCCCAGACCTTCAGATGCAAACTCCCAAAAGAATTCTGAGAAGTCAAAGTATCAGACTGAACCTTGTTACAAGGATACCTCATACACAATGAAGTTTCCTGCTGGATATGAGCTACATGAAGCACTTGGACCAAGTTTTCTGAAAGGGAGTAAATATTTTGAATGGGCAGCTGAGGCAAATCAAGATGTTAAAACCGCTGAGATGTCAGATGAGATTAGCTGTAGCGAAATGACTTCTGAATCTCGCCCAGAGCATCTGTTGGAAGCTATGGTTGCTAACATTTGCCATAGTAATGATAATGTTAATAGTGAGTTATCATTTTCGACATCAATGCAGGCTGCAATGGCCTCGGGAAGGAATCCTGAAGGTTCTATTCACACTGTGCACACTATTAATTCTGAAGGCTGTTCAATAGATCAGCTTCCTCTTGTTAGAGAGGACAAACATTATAGTTTGAGTTCATCTGGGATATGCGGTGTAATGTCCCCAAAGGGTTTTTCTTCTACATGTCCTAGTTCATGTAGTGAACAGTTTGAGAGGTCTTCTGAACCAACTAAGAACAGCAAGAAGAGGGCTAGGCCTGGGGAAAGTTGTAGGCCTAGGCCAAGGGACAGACAACTGATCCAAGATCGTATTAAGGAGTTGAGGGAACTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCATTACTGGAGTGCACCATAAAACACATGCTCTTTCTTCAGAACATAACTAAGCATGCTGACAAGCTAAATAAATTTGCAGATACAAAGACAAAGTTGCATCACATGGAAAAAGACATTCCTGGATCATCAAATTATCAACAAGGTTCAAGTTGGGCAATGGAAGTAGGAGGCCATCTGAAAGTTCGTTCAATATTAGTGGAGAATCTTAATAAGAATGGCCAGATGCTTGTTGAGATGCTGTGTGAAGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCATCAGAAGCTTGGGTCTGACAATTTTGAATGGTGCAACAGAAGCTCATGGCGAGAAGACATGCATATGTTTTGTGGTTGAGGCAGGATCAGAAGGCCAAAACAACAGAAATTTACACAGATTGGATATCTTGTGGCCGCTTGTTCAATTACTGCAATCCAAGAGCACAATGTATTCATAA 2229 0.4096 MGSNLHRLLRSFCLGTDWKYAIFWKLKHRARMILTWEDAYYDNPSSCDSSENKSCQNTLEQIGSADFSHDPLGLAVAKMSYHVYSLGEGIVGQVAVTGNHRWICVDNQVTSSGPSFEFADGWQSQFSAGIRTIVVVAVVPLGVVQLGSLNKQVAEDMGVVTCIRSLFLSTQDYTIGHVPNQVQNSVNSSYVLDTKTSESMPAYLQDTEKTMKHEALDILMPFQCPGKNYSPHAVHQKMAVDVAKHEVPELNTDGSSILLQSISNMTNVEQQKFVGMRPVNERKFEGNNSSCEDTSLESGKNVSSFLHNLVINNNGVNDLVCPSENVRIDSVSFPSDFLDAAVCESDKFHYVDINQKGVLNVPRPSDANSQKNSEKSKYQTEPCYKDTSYTMKFPAGYELHEALGPSFLKGSKYFEWAAEANQDVKTAEMSDEISCSEMTSESRPEHLLEAMVANICHSNDNVNSELSFSTSMQAAMASGRNPEGSIHTVHTINSEGCSIDQLPLVREDKHYSLSSSGICGVMSPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQNITKHADKLNKFADTKTKLHHMEKDIPGSSNYQQGSSWAMEVGGHLKVRSILVENLNKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILNGATEAHGEKTCICFVVEAGSEGQNNRNLHRLDILWPLVQLLQSKSTMYS 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02438 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 553 602 IPR011598 GO:0046983
Pumo3g02438 742 MobiDBLite consensus disorder prediction 361 380 - -
Pumo3g02438 742 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 167 IPR025610 -
Pumo3g02438 742 MobiDBLite consensus disorder prediction 538 567 - -
Pumo3g02438 742 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 740 IPR043561 GO:0003700|GO:0006355
Pumo3g02438 742 MobiDBLite consensus disorder prediction 543 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02438 Pumo-Chr3 37040001 37049096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02438 1 738 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 42.876 1.78e-169 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02438 - - gmx:100777740 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02438 3 37040001 37049096 Pumo3g02438 3 37040001 37049096 ECH
Pumo5g02842 5 75636266 75642634 Pumo3g02438 3 37040001 37049096 PCT