Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02435 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCGAAGCTCCTTGCTCACCTTCCTGTGAGTGATCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCAATTTATGGCTGTGTCTCCCATATTTTCACACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTCAAGGAACAAGCAGCTCAGGGTTGTCTCAGTGCCTCTGTCAGTGAAAACCCTAGTCAAAAATTGTTTGAAAAATCTTCTGCTGCTTTACCCCAAGACCTTCAGAATTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAATTTCTTCCTAACATGTGTACTAATTTATCAGCACAACATTATGGGAACAATGCTCTCATGGAAGATCTAAACCCTATTGGGATTAATTATGAAAATTCAGGAGCCATGGAAGAAAGCAGCTCCTTCTCTAGCTTTGATGAGAGTTCTAATAGCTACTCTATGTCCTATGACATGCAAGCAAACAGGAGGACGTGGGGTTTTCATGAAGTGGAGGATCTACATTCAGTGGCTTTTGGATACGGAACTCGATCACATTCATGA 714 0.4314 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFTLQQQVVNLQAQLAYLKEQAAQGCLSASVSENPSQKLFEKSSAALPQDLQNWFQVENSNLGPEFLPNMCTNLSAQHYGNNALMEDLNPIGINYENSGAMEESSSFSSFDESSNSYSMSYDMQANRRTWGFHEVEDLHSVAFGYGTRSHS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02435 237 Coils Coil 87 107 - -
Pumo3g02435 237 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Pumo3g02435 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 195 - -
Pumo3g02435 237 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02435 Pumo-Chr3 36997163 36998344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02435 7 231 AS2 family AT3G58190 52.423 9.11e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g02435 LOB 4.9e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02435 3 36997163 36998344 Pumo3g02435 3 36997163 36998344 ECH
Pumo5g02840 5 75587091 75587835 Pumo3g02435 3 36997163 36998344 PCT