Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02434 ATGGCTTCTGCAACTGGCAGTGACAGTGGCTCTGGTGGTTCTTCTGGCTTCGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAGTGTGCTGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAGATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCAAAGCTGCTATTGCAGATACCAGCTCACGATCGTTATGAGGCAATGCTCACAATTGCTTATGAAGCACAAGCTCGCATCAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTTGCCCTGCAACAACAGGTAGCATGCTTGCAGGCACAACTAATGCAAATGAAGGCACAGCTGGATCAGAACCAGATGGAGTCCAGGAACTTGGAGAATCATAATTGGTCAGAGAATGTTGGACAACCATTCAATCCATTTTGTCCCACTTCCATGAATAATAACCCTATATCTCCTCAGAGCTCACTTGATTCAATTGATTATAGCAGCATCAATGATGGAATGAGCATGCAAGATGTACAAAGCAGAGAGGATTTCTCAATGCAAGCTTGCAATTCTAAGAAAATATCATATAACAATGACTTGTGTGAGCTGCAAGAATTGGCACTCAGGATGATGAGGAACCGTGACTAG 654 0.448 MASATGSDSGSGGSSGFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLQIPAHDRYEAMLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQMKAQLDQNQMESRNLENHNWSENVGQPFNPFCPTSMNNNPISPQSSLDSIDYSSINDGMSMQDVQSREDFSMQACNSKKISYNNDLCELQELALRMMRNRD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02434 217 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
Pumo3g02434 217 Coils Coil 100 134 - -
Pumo3g02434 217 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
Pumo3g02434 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02434 Pumo-Chr3 36971300 36972821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02434 7 215 AS2 family AT2G42430 52.459 3.69e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g02434 LOB 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02434 K13944 - gmx:100776145 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02839 5 75577797 75579170 Pumo3g02434 3 36971300 36972821 PCT