Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02430 ATGGAATTCAGCTACCAAGAAGATTCCTCCAAAAGCTCAAGCGAAGAGATCGATCGATCGTCCGAACCGAACGATGAGATGGGCACTGGCAGATCCTACGAGTGTGTGTTTTGCAAGAGAGGCTTCACCACTGCACAGGCTTTGGGGGGACACATGAACATACACAGAAAAGATAGAGCCAACAAGGCCAAATCCAATTTCCCTCCTTCGAGTTCAAGCAAGGTTGATGAGAGTAATAACTATGCAGATCTCGGGTTATATTCAGCATCAAATCCAAGCTTTCTTTCAAGAGGGAGCTACTATTCCACTCTTCCTGATCGAGAGGTAGACACTAATTACAATTACTACCATCAATTATACTTTCCCTCACACGCATGTGGTGTCAAATCACCTTCACATGTACAATATAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCATCTTCTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGTTTGTACACTAATCCACTGTGTGTACATGAAAATAAAGACAAGATAGAAAACAACAGCGAGGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 591 0.4349 MEFSYQEDSSKSSSEEIDRSSEPNDEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKAKSNFPPSSSSKVDESNNYADLGLYSASNPSFLSRGSYYSTLPDREVDTNYNYYHQLYFPSHACGVKSPSHVQYSEVLCVENQRDPHLLFGQDWRQRGLSLYTNPLCVHENKDKIENNSEEDDLDLELRLGHHP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02430 196 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Pumo3g02430 196 MobiDBLite consensus disorder prediction 9 25 - -
Pumo3g02430 196 Pfam C2H2-type zinc finger 33 57 - -
Pumo3g02430 196 PANTHER OS07G0101800 PROTEIN 9 195 - -
Pumo3g02430 196 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Pumo3g02430 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Pumo3g02430 196 MobiDBLite consensus disorder prediction 1 28 - -
Pumo3g02430 196 MobiDBLite consensus disorder prediction 58 77 - -
Pumo3g02430 196 Gene3D Classic Zinc Finger 8 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02430 Pumo-Chr3 36870403 36871324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02430 33 95 C2H2 Transcription Factor Family AT5G43540 55.385 1.92e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02430 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02430 - - ccaj:109812060 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02430 3 36870403 36871324 Pumo3g02430 3 36870403 36871324 ECH
Pumo5g02833 5 75537792 75538720 Pumo3g02430 3 36870403 36871324 PCT