Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02428 ATGGAAGGAAACTATCTGAACAGAAACAGTAGTACTCCACAGAGAGAGGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTACTAACCCTAATAATAATAACCCAACTCTTCTTCCACCCTCTTCTTCACCATCTGATGAGCCTTTGAACTATGCACATCCTCCTCCACTTTGTAGTACTCCTTGTCTCACTTTGTCTTCTTCTCCCTCCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACCCCTTCTCACCAGTTCCCTCTTTTGAGTCCTCAAAGCAAGGAAATTAAGATGACGAGTAAGAACACAAGGAGTGATTTCAGTGCTGATGAGGAAATGAAGGGCTGTGTAGAAGAGGAGGAGGAGGAGCACAAGGGTTTCAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGGCTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGACTCGGGCATTAA 636 0.4434 MEGNYLNRNSSTPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPTNPNNNNPTLLPPSSSPSDEPLNYAHPPPLCSTPCLTLSSSPSPASTSGDKKPRLTPSHQFPLLSPQSKEIKMTSKNTRSDFSADEEMKGCVEEEEEEHKGFKNNEQNITLELGIGLLKHQEEKLDLELRLGH 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02428 211 Gene3D Classic Zinc Finger 18 80 - -
Pumo3g02428 211 MobiDBLite consensus disorder prediction 71 145 - -
Pumo3g02428 211 Coils Coil 170 190 - -
Pumo3g02428 211 SMART c2h2final6 35 57 IPR013087 -
Pumo3g02428 211 MobiDBLite consensus disorder prediction 111 145 - -
Pumo3g02428 211 PANTHER OS07G0101800 PROTEIN 10 211 - -
Pumo3g02428 211 MobiDBLite consensus disorder prediction 1 21 - -
Pumo3g02428 211 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
Pumo3g02428 211 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Pumo3g02428 211 MobiDBLite consensus disorder prediction 1 16 - -
Pumo3g02428 211 Pfam C2H2-type zinc finger 35 59 - -
Pumo3g02428 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Pumo3g02428 211 MobiDBLite consensus disorder prediction 71 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02428 Pumo-Chr3 36858901 36859536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02428 23 210 C2H2 Transcription Factor Family AT3G23130 42.553 6.19e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02428 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02428 - - gmx:102662947 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02428 3 36858901 36859536 Pumo3g02428 3 36858901 36859536 ECH
Pumo5g02832 5 75523466 75524089 Pumo3g02428 3 36858901 36859536 PCT