Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo3g02428 | ATGGAAGGAAACTATCTGAACAGAAACAGTAGTACTCCACAGAGAGAGGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTACTAACCCTAATAATAATAACCCAACTCTTCTTCCACCCTCTTCTTCACCATCTGATGAGCCTTTGAACTATGCACATCCTCCTCCACTTTGTAGTACTCCTTGTCTCACTTTGTCTTCTTCTCCCTCCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACCCCTTCTCACCAGTTCCCTCTTTTGAGTCCTCAAAGCAAGGAAATTAAGATGACGAGTAAGAACACAAGGAGTGATTTCAGTGCTGATGAGGAAATGAAGGGCTGTGTAGAAGAGGAGGAGGAGGAGCACAAGGGTTTCAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGGCTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGACTCGGGCATTAA | 636 | 0.4434 | MEGNYLNRNSSTPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPTNPNNNNPTLLPPSSSPSDEPLNYAHPPPLCSTPCLTLSSSPSPASTSGDKKPRLTPSHQFPLLSPQSKEIKMTSKNTRSDFSADEEMKGCVEEEEEEHKGFKNNEQNITLELGIGLLKHQEEKLDLELRLGH | 211 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo3g02428 | 211 | Gene3D | Classic Zinc Finger | 18 | 80 | - | - | |
Pumo3g02428 | 211 | MobiDBLite | consensus disorder prediction | 71 | 145 | - | - | |
Pumo3g02428 | 211 | Coils | Coil | 170 | 190 | - | - | |
Pumo3g02428 | 211 | SMART | c2h2final6 | 35 | 57 | IPR013087 | - | |
Pumo3g02428 | 211 | MobiDBLite | consensus disorder prediction | 111 | 145 | - | - | |
Pumo3g02428 | 211 | PANTHER | OS07G0101800 PROTEIN | 10 | 211 | - | - | |
Pumo3g02428 | 211 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Pumo3g02428 | 211 | SUPERFAMILY | beta-beta-alpha zinc fingers | 32 | 61 | IPR036236 | - | |
Pumo3g02428 | 211 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 37 | 57 | IPR013087 | - | |
Pumo3g02428 | 211 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Pumo3g02428 | 211 | Pfam | C2H2-type zinc finger | 35 | 59 | - | - | |
Pumo3g02428 | 211 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 35 | 62 | IPR013087 | - | |
Pumo3g02428 | 211 | MobiDBLite | consensus disorder prediction | 71 | 99 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo3g02428 | Pumo-Chr3 | 36858901 | 36859536 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo3g02428 | 23 | 210 | C2H2 Transcription Factor Family | AT3G23130 | 42.553 | 6.19e-26 | 97.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo3g02428 | zf-C2H2_6 | 5.7e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo3g02428 | - | - | gmx:102662947 | 290.041 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo3g02428 | 3 | 36858901 | 36859536 | Pumo3g02428 | 3 | 36858901 | 36859536 | ECH | |
Pumo5g02832 | 5 | 75523466 | 75524089 | Pumo3g02428 | 3 | 36858901 | 36859536 | PCT |