Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02427 ATGGGTATTCCAGAAAATATTGTTGTTGGTTCTCATGTTTGGGTCGGAGATCCAGAACTAGTTTGGCTTGATGGACAAGTACTGAATATTAATGGAGAAGAAGCTGAAATTCAAACTAGTAATGAGAAGAAGGTTGTTTCCCGTTTGTCAAAATTACATCCCAAAGATATGGATGTGCCTACTGACGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAACTAGATACATGATGAATGAAATATATACTTATACTGGGAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACACCTGTATGATACTAATGTGATGCAAAGATACAAGGGAGCAACAATTGGAGACTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTAATGAGGAGAAAAACAACTCTATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTGGGTGGTCACACTGCATCTGAAGGACGAACTGTTGAAAAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACCGTTAGAAATGAGAATTCGAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTAATAAGTATGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGGGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGAAACTGATTCATCAGTTTTAGAAGATGAAGAATCCAAGTTTCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATGCTTTGGAAGGTGCACTCCGTGAGCGTGTGATGATTACTCCAGAAGAAGTCATCAAAAGAAGTCTTGATCCTCTTGGTGCTACAGTTAGCAGGGATGGTTTAGCCAAAACACTATATTCTCGTTTATTTGACTGGTTAGTCCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACGAATAGTTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCGCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCGACTCATGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGACTTCACTGTTGTTCATTATGCAGGGGAGGTTCAATATCAGTCTGAGCAGTTTTTAGACAAGAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCGTCCAAATGTTCATTTGTATCAGGCCTTTTCCCTCCACTTTCTGAGGAATCAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTCAAGCTACAATTACAACAATTGATGGATACACTCAATCTGACAGAGCCACACTATATTAGATGTGTGAAGCCAAATAGTCTATTAAAACCTTGCATATTTGAAAATATGAATGTCATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACTGGACCTTTCGTGATTTTTTAACTCGATTAGGCATTCTTGCTCCGGAGGTTCTTCGAGGGAACTTCGAAGAAAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAGACAAAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGGTCGGAGAGCACTCCTGCTCAGTAATTCTGCAACAGTTATCCAAAAGCATACTAAAACTCATCTTAGTCGGAGAACATATATTGCATTGCAAAAGTCCTCTGTTTTTCTGCAATCCATTTGCAGAGGAGAACTGGCTCGAAGATCATATTATCACATGAAGAGGGAAGCAGCTGCAGTCAGAATTCAAAAGTATACGCGTCGAACACTAGCCAGGAAATGGTACACCGAAATAAAGATCTCTGCCACTGTCTTGCAGACAGGTTTTCGATCCTATTGGCGCCGACATAAAGCTCTCTCTGACTATCAGAACCTTAAGAAAGCGTCAATCATTTCAAGAAGCATCAATCACTCCAGTGATAAACATGAACAGAAGGTTTTGGAGACACCTGTGCAAAATGAAAGTCCTTCTATGGAAGAATCTTCAAATCCTGCCCAAGAAGAATCCTCAAGTCCTTTCCAAGGTGATGAAAGCATTGAAGCTATAAGGGATTCCTCTAGTCCTCTCAAAGACAGTGAAAAGATTGAGGCTCTTACTGTGGAAATAAAAAATTTGAAGGTCATGTTGCAAGCAGAGAAACAAAGAGGTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCTAGTGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCGTTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGATGATCTTGAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGGGTTGACGTTGCTTCCAGTAACTCCGATACTTCATCAACAGACTCTGATTTCACATTTCCAGCTCCTGTTTCGAATCCAGAACCTCTTTCTTCCCCAGAGTCAAATTCTTTCCAACTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGATCTGAAAAGGAGGGTTCATTTGATGATTTCTTCTAG 3165 0.3968 MGIPENIVVGSHVWVGDPELVWLDGQVLNINGEEAEIQTSNEKKVVSRLSKLHPKDMDVPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGATIGDLSPHVFAIAEAAYRAMINEEKNNSILVSGESGAGKTETTKMLMQYLAYLGGHTASEGRTVEKQVLESNPVLEAFGNAKTVRNENSSRFGKFVEIQFNKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEETDSSVLEDEESKFHLQTTAELLMCDPNALEGALRERVMITPEEVIKRSLDPLGATVSRDGLAKTLYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLARSDFTVVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSASKCSFVSGLFPPLSEESAKSAKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNSLLKPCIFENMNVIQQLRSGGVLEAVRIKCAGFPTHWTFRDFLTRLGILAPEVLRGNFEEKDSCKKILEKIGLTGYQIGETKIFLRAGQMAELDGRRALLLSNSATVIQKHTKTHLSRRTYIALQKSSVFLQSICRGELARRSYYHMKREAAAVRIQKYTRRTLARKWYTEIKISATVLQTGFRSYWRRHKALSDYQNLKKASIISRSINHSSDKHEQKVLETPVQNESPSMEESSNPAQEESSSPFQGDESIEAIRDSSSPLKDSEKIEALTVEIKNLKVMLQAEKQRGDEYERKYVEAQGSSEELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKMILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPAPVSNPEPLSSPESNSFQLVVQDVTAGDGSGSEKEGSFDDFF 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02427 1054 CDD MYSc_Myo11 76 720 IPR036018 -
Pumo3g02427 1054 FunFam Myosin heavy chain 252 307 - -
Pumo3g02427 1054 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Pumo3g02427 1054 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Pumo3g02427 1054 Pfam IQ calmodulin-binding motif 760 778 IPR000048 GO:0005515
Pumo3g02427 1054 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Pumo3g02427 1054 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 SMART iq_5 805 827 IPR000048 GO:0005515
Pumo3g02427 1054 SMART iq_5 734 756 IPR000048 GO:0005515
Pumo3g02427 1054 SMART iq_5 757 779 IPR000048 GO:0005515
Pumo3g02427 1054 SMART iq_5 782 804 IPR000048 GO:0005515
Pumo3g02427 1054 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 MobiDBLite consensus disorder prediction 842 884 - -
Pumo3g02427 1054 Gene3D - 667 733 - -
Pumo3g02427 1054 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 MobiDBLite consensus disorder prediction 1035 1054 - -
Pumo3g02427 1054 Gene3D - 252 310 - -
Pumo3g02427 1054 PANTHER MYOSIN 54 983 - -
Pumo3g02427 1054 MobiDBLite consensus disorder prediction 996 1028 - -
Pumo3g02427 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 785 IPR027417 -
Pumo3g02427 1054 Coils Coil 903 958 - -
Pumo3g02427 1054 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g02427 1054 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Pumo3g02427 1054 Gene3D - 439 623 - -
Pumo3g02427 1054 SUPERFAMILY Tropomyosin 867 973 - -
Pumo3g02427 1054 MobiDBLite consensus disorder prediction 857 884 - -
Pumo3g02427 1054 FunFam Myosin 2 312 426 - -
Pumo3g02427 1054 MobiDBLite consensus disorder prediction 996 1012 - -
Pumo3g02427 1054 FunFam Class V myosin 439 582 - -
Pumo3g02427 1054 Gene3D Kinesin motor domain 65 662 IPR036961 -
Pumo3g02427 1054 ProSiteProfiles IQ motif profile. 783 811 IPR000048 GO:0005515
Pumo3g02427 1054 Gene3D - 735 784 - -
Pumo3g02427 1054 Gene3D - 785 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02427 Pumo-Chr3 36829005 36851654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02427 1 962 Myosins gene family AT1G54560 62.959 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02427 K10357 - gmx:100803485 1949.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02427 3 36829005 36851654 Pumo3g02427 3 36829005 36851654 ECH