Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02426 ATGTTTTACTTATCCTCGATGTGTTATATATTTGGTTTTGATTCCCCATGTGGCCCTGGCAGTTCGTTCAAGTCCGGTAAATTTATTTGGGCTTCTGATGCTTCTGGTTGTTTAAACCAATTAGAGTCTAGATCGTTTCTAGGGAAGTCAGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAGTCCGGGGTGGTGGAGCTTGGTTCGCTTGAAATGGTGCCTGAAGAGCAGGGTGTTGTGGAGATGGTCCGGACAGCATTCGGGGAATCCAGTCCTGGACAGGCAAAGGTGTTTCCGAAGATTTTTGGGCATGAGTTAAGCCTGGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCGAAGGTGGAAGATGATCCTGGTTTTACTTCGGACTCTTATGAAGTTCAAGCACTAGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGTGACAATAATGAAGGTAAAATGTTCCCTCAATTGAATCAAATGATGGCTGGGAATTTTAATGCTCAAGCAAGGGTTCCTTGTCTAGATCTTGGTAACGAAGACTCATCCTCGATTCATGCAGATGAGCGGAAGCCCAGAAAAAGGGGTAGAAAGCCTGCCAATGGGAGAGAGGAACCGCTGAACCATGTTGAAGCTGAGAGACAAAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTGAGAGCTGTTGTCCCTAACATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGATTAACAATAAGGACCAAAAGTTGTCATTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCCTTGGATATTCACCCTGTTTCTAACGTTGTTAAAACGTTCAGGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCAACTACAGAGGACAAAATAATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCTACTCAGTTGAAAGAAAAGCTTGAAGCATCCCTATCCAAAAATTGA 1098 0.4362 MFYLSSMCYIFGFDSPCGPGSSFKSGKFIWASDASGCLNQLESRSFLGKSAGLQTVVFVPLKSGVVELGSLEMVPEEQGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGDNNEGKMFPQLNQMMAGNFNAQARVPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQKLSLPDMDFQEREDDTVVTVRCPLDIHPVSNVVKTFREHQIVAQDSSVSTTEDKIIHTFSIRTEGGEAAATQLKEKLEASLSKN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02426 365 FunFam Transcription factor bHLH13 206 280 - -
Pumo3g02426 365 MobiDBLite consensus disorder prediction 191 224 - -
Pumo3g02426 365 CDD bHLH_AtAIB_like 210 288 - -
Pumo3g02426 365 Pfam Helix-loop-helix DNA-binding domain 217 263 IPR011598 GO:0046983
Pumo3g02426 365 Coils Coil 259 279 - -
Pumo3g02426 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Pumo3g02426 365 SMART finulus 219 268 IPR011598 GO:0046983
Pumo3g02426 365 PANTHER MYC 1 361 IPR045084 GO:0003700|GO:0006355
Pumo3g02426 365 MobiDBLite consensus disorder prediction 186 224 - -
Pumo3g02426 365 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 88 IPR025610 -
Pumo3g02426 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 281 IPR036638 GO:0046983
Pumo3g02426 365 Gene3D - 206 279 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02426 Pumo-Chr3 36799443 36801470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02426 1 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 52.316 7.09e-126 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02426 bHLH-MYC_N 3.8e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02426 - - gmx:100819968 696.427