Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g02416 | ATGATCAAAGACGCAATTACCTCGCTGAAGGAGAAAACCGGTTCGAGCCAATACGCGATTGCGAAGTTCGTTGAGGAGAAGCACAAGCAGCTTCCACCGAACTTCAGGAAGCTTCTTCTCTACCATTTGAAGAAGCTTGTCGCTGCTGGAAAACTCGTCAAAGTCAAAGGCTCCTTCAAGCTTCCACCGACTAGACCTTCTGCATCTTCTTCTTCTTCTTCTTCTCCGGCGAAGAAGAAGCCAGCAGCTGCTAAGCCTAAACCCAAGCCCAAGCCTAAGCCCAAGCCCAAGCCCGCTGCCAAGGCCAAGGACACCAAAGCTACTAAATCAAAGGCACCAGCCAAGCCCAAGCCAGCTACTAAGCCCAAAGCTAAAGCCCCAGCCAAGCCCAAGCCCAAGCCCGCTGCTAAACCAAAGCCTGCTGCTGCCAAGCCCAAGCCTGCTGCCGCCAAGCCTAAAGCCGCTAAGCCAGCTGCCAAGCCCAAGCCCGCTGCTGCCAAGCCCAAAGCAGCTGCTAAGCCCGCGGCAAAGCCCAAGGCCAAGCCTGCCAAAGCTGCAAGGACGTCGACGAGGACTTCACCGGGGAAGAAAGCCCCTGCCGCTAAGCCCGCACCGAAGAAAGTTGCGGCTGCGAAGAAAGCACCAGTGAAGAGTGTGAAGCCAAAGAGTGTAAAGTCTCCGGTGAAAAAGGCTACAGCTAAGAGAGGGGGTAGGAAGTGA | 720 | 0.5528 | MIKDAITSLKEKTGSSQYAIAKFVEEKHKQLPPNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPSASSSSSSSPAKKKPAAAKPKPKPKPKPKPKPAAKAKDTKATKSKAPAKPKPATKPKAKAPAKPKPKPAAKPKPAAAKPKPAAAKPKAAKPAAKPKPAAAKPKAAAKPAAKPKAKPAKAARTSTRTSPGKKAPAAKPAPKKVAAAKKAPVKSVKPKSVKSPVKKATAKRGGRK | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g02416 | 239 | SMART | h15plus2 | 1 | 58 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pumo3g02416 | 239 | MobiDBLite | consensus disorder prediction | 63 | 78 | - | - | |
| Pumo3g02416 | 239 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 1 | 63 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pumo3g02416 | 239 | MobiDBLite | consensus disorder prediction | 97 | 111 | - | - | |
| Pumo3g02416 | 239 | MobiDBLite | consensus disorder prediction | 82 | 96 | - | - | |
| Pumo3g02416 | 239 | Gene3D | - | 1 | 69 | IPR036388 | - | |
| Pumo3g02416 | 239 | PANTHER | HISTONE H1 | 1 | 184 | - | - | |
| Pumo3g02416 | 239 | Pfam | linker histone H1 and H5 family | 1 | 61 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pumo3g02416 | 239 | CDD | H15 | 1 | 64 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pumo3g02416 | 239 | MobiDBLite | consensus disorder prediction | 116 | 132 | - | - | |
| Pumo3g02416 | 239 | PRINTS | Proline rich extensin signature | 92 | 108 | - | - | |
| Pumo3g02416 | 239 | PRINTS | Proline rich extensin signature | 70 | 91 | - | - | |
| Pumo3g02416 | 239 | PRINTS | Proline rich extensin signature | 115 | 132 | - | - | |
| Pumo3g02416 | 239 | PRINTS | Proline rich extensin signature | 136 | 161 | - | - | |
| Pumo3g02416 | 239 | MobiDBLite | consensus disorder prediction | 223 | 239 | - | - | |
| Pumo3g02416 | 239 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 66 | IPR036390 | - | |
| Pumo3g02416 | 239 | MobiDBLite | consensus disorder prediction | 54 | 239 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo3g02416 | Pumo-Chr3 | 36661630 | 36662801 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g02416 | 1 | 69 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 39.130 | 2.02e-08 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g02416 | K11275 | - | gmx:100795994 | 119.783 |