Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02408 ATGAAGATGAAGAGGTTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAAAAAGTTCCTCAAAGATGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGACAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAAAATTGATTTGGGCATTGTTCCACTTGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTCCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCCCCTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAACACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTTGCCTGCAGGGGTCTAGTTTCTCCATTGAGAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCCCCAAGATAATTCATGCTCACCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGACAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGGACCACAGAATGGTGCTGAACCACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCGTCTGATGCTAAACTAGAATCCATGAAAGTGATTGACAGTGATGCTAAGGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGTCTCTTCAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACTGACAGTAATCTCTTATGCAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCGCAAATTCCTTCAAATTATGTAAGAATAAAGAACGGAAGCATACCTGTCTCATTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTACAAAATTTGGTTGAATTGTGGCTTAATACGGCATCTACAGGACACAGAATTCCAGCAACCATTGGATCCTCAGGGAAAGATTTTGTCATGATCCTAACCTATGGTAGGAAGGTCCCACACCCTTGA 1290 0.407 MKMKRLVRVKRDAIAACMTCPLCKKFLKDATAISLCLHTFCRKCIYDKITDEELENCPVCKIDLGIVPLEKMRPDNSLQDLRNKIFPSKKRKEKAPVSVPSVLLPARRKERSLSSLVVNTPRVCTQSTMTGRRTKPARKASCLQGSSFSIEKLIKKEEELLEDPQDNSCSPDTSNKSAKNGGQSLSPCKNSQSICNRGPQNGAEPQEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKVIDSDAKVLKAKIKEKKRKAKVEDEKISTDHVSSDTAKPNKLRRVRPKKEPVFGESRISPQAVLDATDSNLLCNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLNTASTGHRIPATIGSSGKDFVMILTYGRKVPHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02408 429 Coils Coil 250 270 - -
Pumo3g02408 429 SUPERFAMILY RING/U-box 15 84 - -
Pumo3g02408 429 MobiDBLite consensus disorder prediction 161 206 - -
Pumo3g02408 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Pumo3g02408 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Pumo3g02408 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 425 IPR044807 GO:0004842
Pumo3g02408 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Pumo3g02408 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Pumo3g02408 429 SMART ring_2 20 60 IPR001841 -
Pumo3g02408 429 MobiDBLite consensus disorder prediction 268 295 - -
Pumo3g02408 429 MobiDBLite consensus disorder prediction 166 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02408 Pumo-Chr3 36544346 36550307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02408 1 348 C3H Transcription Factor Family AT2G30580 48.424 1.33e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02408 K16277 - gmx:100778462 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02816 5 75275262 75284319 Pumo3g02408 3 36544346 36550307 PCT