Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02401 ATGGAAGCTGGCCTCAAGAAGGAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTGGGTCTGGGACTAGGACTCCCTGGAAATGGAGCCACTGAAGCTGCAGAAGGAGTGAGGAAGAGAGGGTTCTCTGAAACTGAAACTGAAACAACCACCGTTGATTTGATGCTTAACCTCTCCCCCAAGGAAGCTGCTGATGGAACAGATCCACGTGAGAAGCCAAAGACTTCGCCAAAGGAGAAGACTCTTCTGCTTCCCGATCCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGATGGCCACCCGTGAGGTCTTTCAGGAGGAACATGTTTGCAGCCCAAAAGAGCAGCGCAGAGGAAAGTGAGAAGAACAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCCCCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTATGTCCCGACCTACGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTGCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 738 0.4986 MEAGLKKEKMVFEETELRLGLGLGLPGNGATEAAEGVRKRGFSETETETTTVDLMLNLSPKEAADGTDPREKPKTSPKEKTLLLPDPAKPPAKAQVVGWPPVRSFRRNMFAAQKSSAEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02401 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Pumo3g02401 245 MobiDBLite consensus disorder prediction 21 95 - -
Pumo3g02401 245 Pfam AUX/IAA family 15 236 IPR033389 -
Pumo3g02401 245 FunFam Auxin-responsive protein 122 237 - -
Pumo3g02401 245 Gene3D - 120 239 - -
Pumo3g02401 245 MobiDBLite consensus disorder prediction 64 79 - -
Pumo3g02401 245 SUPERFAMILY CAD & PB1 domains 122 226 - -
Pumo3g02401 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 232 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02401 Pumo-Chr3 36464054 36467571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02401 115 230 B3 DNA Binding Superfamily AT3G61830 33.621 5.20e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g02401 AUX_IAA 1.5e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02401 K14484 - gmx:100780214 415.616