Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02400 ATGGAGAATTCGATGGGAAAGTACGAAAAAGAGCTTAATCTCGAGGCCACAGAGTTGAGATTGGGGTTGCCCGGTAGCGATGAGCCTGAGAAACGTTCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAGGAAGAGTGCATAAGCAAGGGCAACATGAATTCTAATGGCTCTGATATCACAAGTGAGGATGACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAGTAGTCTACAACAAAAAGAAGAACAAGGTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGCAGGTGCACCATACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAATATGTTCAAGTGCACTTTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGGGACTGGATGCTGGTTGGAGATGTTCCATGGCACATGTTTGTGTCATCATGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCTAAGGGGTTGGGTTGTTTTTGA 606 0.4505 MENSMGKYEKELNLEATELRLGLPGSDEPEKRSVVRSNKRSSPEASEEECISKGNMNSNGSDITSEDDQDNVVPPAKAQVVGWPPVRSYRKSSLQQKEEQGEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLGCF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02400 201 MobiDBLite consensus disorder prediction 24 47 - -
Pumo3g02400 201 MobiDBLite consensus disorder prediction 18 78 - -
Pumo3g02400 201 SUPERFAMILY CAD & PB1 domains 101 191 - -
Pumo3g02400 201 ProSiteProfiles PB1 domain profile. 105 192 IPR000270 GO:0005515
Pumo3g02400 201 FunFam Auxin-responsive protein 100 201 - -
Pumo3g02400 201 Pfam AUX/IAA family 17 199 IPR033389 -
Pumo3g02400 201 Gene3D - 100 201 - -
Pumo3g02400 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 196 IPR003311 GO:0005634|GO:0006355
Pumo3g02400 201 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02400 Pumo-Chr3 36441897 36443648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02400 92 198 B3 DNA Binding Superfamily AT2G46530 35.514 2.21e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g02400 AUX_IAA 2.9e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02400 K14484 - gmx:100780752 372.089