Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02398 ATGGCGAATCACCCCTCCGAAGCTCCCACCGACGACTTCCTGGAGCAAATCCTGGGCCTCCCGACCTTCGCCTCCGCCGACCCCGCCTTGGCCGCCGCCGACGCCTCTCCGATGATGCTTCAGCTCAACTCCGGCGACGCCGCCACCCACCTCTCCGCCGGAGGCCCCTTCCACGCGCCGCCGTACCAGCTCGGCCTCAGCTTGGACCAAGGCAAGGGAGCCTTCCTCACGCCCGAGGATGCTTCTGGAAGCGGCAAGCGCTTCCGCGACGACGTCGTTGATACCAGACCTAAGAACGTTTTTCATGGGCAACCCATGCCTGCTACTGTTCCTACTGCTCCACATCCACCAGCAGTGCGACCTAGAGTGCGAGCTAGAAGAGGACAGGCTACAGATCCACATAGTATAGCTGAAAGGTTACGCAGAGAGAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGCAGTGAGGGAAGAAACCAGCCAGCTTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATCATGCCCATCTCACTAGCATCAGCAATATACCAGACACAACCATCAGACACTTCTAGTATAGTTAAGCCTGAAACTAATCCTCCTTCATAG 855 0.5392 MANHPSEAPTDDFLEQILGLPTFASADPALAAADASPMMLQLNSGDAATHLSAGGPFHAPPYQLGLSLDQGKGAFLTPEDASGSGKRFRDDVVDTRPKNVFHGQPMPATVPTAPHPPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQTQPSDTSSIVKPETNPPS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02398 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 188 IPR036638 GO:0046983
Pumo3g02398 284 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Pumo3g02398 284 SMART finulus 135 184 IPR011598 GO:0046983
Pumo3g02398 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Pumo3g02398 284 Gene3D - 124 186 IPR036638 GO:0046983
Pumo3g02398 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 263 - -
Pumo3g02398 284 FunFam Basic helix-loop-helix transcription factor 124 186 - -
Pumo3g02398 284 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02398 Pumo-Chr3 36426421 36430837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02398 57 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.426 1.42e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02398 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02398 - - gmx:100793177 464.151