Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02380 ATGTTCCCTGCAGTTATGTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGCTGGACTCAATCACGTTGTCACAACAACCATTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCTCTATCCCCGAAGACTCTTCTAGCTACCAATAGATTTGTGTGTGAGGTCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGGCACAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAGGCCTACGTTTGCCCAGAGCCTTCGTGCGTTCACCACAACCCTTCAAGGGCCTTAGGGGACCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGCGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAATTAGCCACCAACACCACCACAAACCCATTAGTCCACTCCCTCTTCCTTTTCCCAACCCAACAACACAACAACAACTTCATCAATCCCTGGGACCCTAACCCTAACCCTAACCCTAGCAACCTCACCACCCTCCACAACAACATCAAACCTGAATCTCACAACTTCCACATCCCCAACAACAACAACAACAACCTTTCTTCTTCATTCCTTCATCATCAGCACCCCAAGGGCATGATAACCTCACCCTTCCGTGACCTCCACTTGCGCAACTCCAACGCTTCCACTTCAGCACACCTCTCAGCCACTGCACTGCTCCAGAAGGCCGCCACCGTCGGTGCCGCCGCCATCACCGGCCCCACTCACTTGACTCAGCTCGGCATGGCCGAGTTAGGAACCGTGGCGACTCAGCTCGACTCGGTGCCACCCGATCAACGCTACATCAACATGAGAGCCCTCAAGAACAACAATGTCGACGGCCTCACCAGGGACTTTCTCGGCCTCACCAACGATGGCGCGGTTGACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACCGCGGGGAGCGTAAAGTACAACCATCACCACCACCACCAACCCTACGAGCACCATCACAATCATAATAACTCGCTTTTCAAGCCCCAACAAGGTTTCGGATTCCTTGGGACAACAACCACTGGCCCCGAGTCCTGGGGAAATTGTGAGTAA 1335 0.5026 MFPAVMSNSLSEEATVSCGTRIAGLNHVVTTTISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNTTTNPLVHSLFLFPTQQHNNNFINPWDPNPNPNPSNLTTLHNNIKPESHNFHIPNNNNNNLSSSFLHHQHPKGMITSPFRDLHLRNSNASTSAHLSATALLQKAATVGAAAITGPTHLTQLGMAELGTVATQLDSVPPDQRYINMRALKNNNVDGLTRDFLGLTNDGAVDVSIDVKDMLTFTAGSVKYNHHHHHQPYEHHHNHNNSLFKPQQGFGFLGTTTTGPESWGNCE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02380 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Pumo3g02380 444 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Pumo3g02380 444 FunFam protein indeterminate-domain 12-like 50 118 - -
Pumo3g02380 444 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pumo3g02380 444 Gene3D Classic Zinc Finger 50 119 - -
Pumo3g02380 444 SMART c2h2final6 112 142 IPR013087 -
Pumo3g02380 444 SMART c2h2final6 147 167 IPR013087 -
Pumo3g02380 444 SMART c2h2final6 71 93 IPR013087 -
Pumo3g02380 444 Gene3D Classic Zinc Finger 140 205 - -
Pumo3g02380 444 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pumo3g02380 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 403 IPR031140 -
Pumo3g02380 444 MobiDBLite consensus disorder prediction 34 54 - -
Pumo3g02380 444 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02380 Pumo-Chr3 36129232 36134330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02380 15 416 IDZ Gene Family AT4G02670 49.406 3.70e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02380 zf-C2H2 0.0066 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02380 K25870 - gmx:100812496 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02380 3 36129232 36134330 Pumo5g02794 5 74958639 74963200 PCT