Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02379 ATGAATTATATGTATCAAGTGAAAGAAGAATACTTAGAATCATCACCATCATCATCATCATATCAATTAGGTAGTGAATATGCACCAAAGCCAATTGAGGGACTTCATGACACGGGACCCCCGCCATTCCTGACCAAAACTTTTGATGTTGTGGATGACCCAGCTACCAACCATGTAGTTTCTTGGAGCAGAGATGGCACAAGCTTTGTGGTTTGGGATCCACATACCTTCTCCACAAGTCTTCTTCCCAGATACTTCAAGCACAACAATTTTTCAAGCTTTGTCAGGCAACTGAACACTTACGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGATTCATCAGAGGGCACAGGCACCTGTTGAGGAGCATAAGGAGAAGGAAGGCTCCTTCCCAACTAACACAAGGCCACCACTGTGTTGAAGTTGGACGTTTTGAATTAGACAAAGAGATTGATCGCTTGAGGCGCGACAAGCTGGTGTTGATGATGGAGCTTGTGAATCTCAGACAGCAGCAACAGAAAGCCAGAATGTACATTCAGGAGATGGAGCAAAGGTTACAAGGGACAGAATTCAAGCAGCAACAGATGATGGCCTTCTTAGCAAGAGCTATAAAAAATCCTGCCTTCATACACCAACTCCTACAGAAAGAGAAGAGAAAGGAGCTTGAAGAAGCCTTCACCAAAAAGAGAAGGCAAATTGAGCAAGGAGCTAGAGGGTTTGGAGAATCGAGTAGTGGGGGTGGTGAAGGAAGGAGCAGTGTTAAAGTTGAGGCCTTAGAATTTGGGGATAGTGGATTTGGAGTTTCAGAGTTGGAAATGTTAGCTAGGGAAATGCAGGGTTTTGGAAAGGGGAGGATTGAGGTAGGACCTGAGGCACTAGAATCACAAGAGAGGCTTGATAGAGTACTTGATGAAGACTTTTGGGAAGAACTATGTTTAGTGAGAAATTTGAAGGTCGATTAG 978 0.4356 MNYMYQVKEEYLESSPSSSSYQLGSEYAPKPIEGLHDTGPPPFLTKTFDVVDDPATNHVVSWSRDGTSFVVWDPHTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFIRGHRHLLRSIRRRKAPSQLTQGHHCVEVGRFELDKEIDRLRRDKLVLMMELVNLRQQQQKARMYIQEMEQRLQGTEFKQQQMMAFLARAIKNPAFIHQLLQKEKRKELEEAFTKKRRQIEQGARGFGESSSGGGEGRSSVKVEALEFGDSGFGVSELEMLAREMQGFGKGRIEVGPEALESQERLDRVLDEDFWEELCLVRNLKVD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02379 325 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02379 325 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02379 325 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02379 325 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02379 325 MobiDBLite consensus disorder prediction 231 257 - -
Pumo3g02379 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 245 IPR027725 -
Pumo3g02379 325 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02379 325 Gene3D - 35 133 IPR036388 -
Pumo3g02379 325 FunFam Heat shock transcription factor 1 36 133 - -
Pumo3g02379 325 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Pumo3g02379 325 Coils Coil 156 190 - -
Pumo3g02379 325 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02379 Pumo-Chr3 36117652 36119064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02379 14 317 HSF AT3G22830 51.170 1.09e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo3g02379 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02379 K09419 - gmx:100811945 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02793 5 74941766 74943983 Pumo3g02379 3 36117652 36119064 PCT