Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02372 ATGGAGCAGTATGAAATTCTAGAACAAATTGGAAGAGGTTCCTTTGCTTCTGCTCTGCTTGTCAGGCACAAACACGAAAACAAAAACTATGTCCTTAAGAAGATCCGGCTTGCTCGCCAGACTGACAGAACTCGTAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATCGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGACGGAAGCAATTAAAAAGGCCAATGGCATTCATTTTCCTGAAGAGAGACTTTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAGGATCAAGATATTCGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGCGATGATCTTGCTTCCTCTGTTGTGGGGACTCCAAGTTATATGTGCCCCGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGACATGCAGGCACTGATCAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTCCAATGGTCTGACTCAAACTATGTAAGGAGGACTCAGTTTGTAGGGCCAGAATCTGTTTCCACTCTTTCTGACAGAGATAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGCGCAAGGATTCTCTACTTGTTTGAAAGAGAAACACTATGAACTATCTGTTGGCTGTGTCCGTGAAGAATGCAATTCTAACAAGTCAAGAGACACAAAGTCCTCTACCGTTGATAGGATGCCAAGATTGAGAACATCTAAGGAATATGCCACCCCCCGACGGCAGACAATACCATCAATATCAAAGATATCATATACTGGTTCCAAGCATGAGTTACTTCCAGCATCTTTCACTCCAGTTGGTAAATTCACCCCAGCAACTCGCAGAGCTTCCCTTCCACTGCCTACCAGAACCATGGGCACGACCACCCCTTATAGAGCTAATGTTGGTCTTCTTCGAGGTGTGGACTCTCCTGATATTTCTGTTAATGCACCGCGAATTGACAAGATGGCCGAATTCCCTCTGGCCTCTTGTGAGGATCCTCTCTTCCCTGTCCGTGGAACTTCATCAACTTCGGCTCAGTGCTCTTCTGGTTCCCCAAAGAGTGCTGACTGCTTAATCACGAAGGACAAGTGTACAATCCAAGTTGTGGACAAAGCCAGTGTCCCTTCCAGTGGCAGTGATGCTTGCCCTGCTGCTCCAGCTTCACATGGCAATGAATGCTCTGAACATGCTGTTTCAAGCCACTCCTCTGCTGAGTCTCGCCGACACAGGTTTGACACCTCGTCTTACCGGCAACGTGCAGAGGCATTGGAAGGTTTGCTTGAGTTCTCCGCTCGGCTCCTACAGCAACAGAGATTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAAACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTGGCCTAA 1842 0.4457 MEQYEILEQIGRGSFASALLVRHKHENKNYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGIHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTQFVGPESVSTLSDRDKRLSFSNDRALNPSISGTELGSVCSTQRAQGFSTCLKEKHYELSVGCVREECNSNKSRDTKSSTVDRMPRLRTSKEYATPRRQTIPSISKISYTGSKHELLPASFTPVGKFTPATRRASLPLPTRTMGTTTPYRANVGLLRGVDSPDISVNAPRIDKMAEFPLASCEDPLFPVRGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKASVPSSGSDACPAAPASHGNECSEHAVSSHSSAESRRHRFDTSSYRQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02372 613 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pumo3g02372 613 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 569 - -
Pumo3g02372 613 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Pumo3g02372 613 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Pumo3g02372 613 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02372 613 SUPERFAMILY Protein kinase-like (PK-like) 1 314 IPR011009 -
Pumo3g02372 613 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02372 613 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Pumo3g02372 613 MobiDBLite consensus disorder prediction 516 554 - -
Pumo3g02372 613 CDD STKc_Nek 3 258 - -
Pumo3g02372 613 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Pumo3g02372 613 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02372 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02372 Pumo-Chr3 36050209 36059719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02372 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 3.36e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo3g02372 Pkinase 6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02372 K08857 - gmx:100810347 1153.66