Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02353 ATGGCAATTGATGATACAAATTCAAGGAAGTCTGCTGGGGTTGAGTTAGAAAAGAAGGAAGTTTCTCATGTCGCGAAGAGTAAAGTAAAGCAGTTAGTGAGGGATCAAATAAAGGAACAGCTCTCAGCTGCAGGATGGACAGTTGACTATAGACCCAGGAATGGCAGAGAGTACCATGATGCAGTGTATGTTAGTCTGGACGGACATACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATACCAGAAGAGGATTTCAAAATACTAACTAAGGTAATTAACAAGCAAAGAAAAAAGAAAGATAAATTGGTACAAAAGGGGGGAAAGGGTGGAAAGAAAGTTGATGGAGTCAATGGTAAAAAGAACAAAGAAAAGTCAAGTTCTGGTGCAGGCATGGGTAAGTCAATGAAGAGGAATATGAAAAGGAAAACATCACCTAACAGGATGCCAGTTGTGAGGGATCATAAGCGACACAAAACACAAAACAAGAAGCGATGTGCTCCGTTGGTTCGCAATGCTGAGGAGATAGATTCAGAAACCGAGGGATATGTACTGTACAGCGGAAAACGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCAAAATGTGAAGGTTCATTATATGCCACACGAAAGTAAAAGTGCAGTACTGGATGGTGAGATTACAGGAAATGGCATTCATTGTGGCTGCTGTGGTAAAATCGTTACAATTTCGGACTTTGAAGTTCATGCAGGAAGCAAACTTGCTGATCCACTTAAAAATATATATGTGGAGGAAGGAACTTCCCTTTTACAATGCTTGCTAGATTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCATCAACATTCCATCAAGGCTGCTTGGATATAAAAAAGTTTCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAGTGGAAGTTCAAACCAAAGGGATGGCAATGATGAACTTACTGTGTCAAAATTACTCACATGCCAATTATGTGAGGAAAAATATCACAGATCCTGTATTGAGGCTAATGATGCCAATACTAATGATTCCAAGGATGTCTTCTTTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGGGTTAAGCATGAAATGGAAGATGGATATTCTTGGACTTTTATTCGACGGTCAGATGTTGGCTTTGATGCTTCTCAGATAAAACCTCAGATGGTTGAATGTAATTCTAAGCTGGCTGTTGCAATATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGAATCAATCTGATCCACAGTATTCTGTATAATCGTGGGTCAAATTTCAATCGTCTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGCTGCATCTATCAGGATCCGCGGGAACCAACTAGCAGAGATGCCATTTATTGGTACCCGCTATATGTACAGGCGACAAGGAATGTGCCGCCGGCTTCTAAATGCCATTGAATGGGGACTCAGCTCTTTAAATGTTGAGTTATTGGTCATACCAGCTATCTCAGAACTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCACTTGAATCAACAAGCAAGCAAATATTACATAATAAGAATCTGTTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATTTCAAAACATAAATTGGCTGGTCAAAATCTGATTCCTTCAGAAGCTTTCAATCTTAAAAGGAATCAAATAGCAAATAATTGTGATGGAGCGGGCTCATCCGGATCTGATTTGATCAATTATACTGAGATTCCTCCCTCATGCCAGATAAATGATGAAACCATATCTATTGAATCTGGTTGTCATCGCAACGTTAAAGATCATAGGATATCTTCAAAAGATGGCACATGTCAAGTTGTATGTCAGGCAGTTCATGAAAATTTGGTGATGGAAGACAACAACAGTATTGAAAATGCCTGTGATTATGTGACTGATACTTGTTGCCGAGCTGGAGATAGCCAGTTGAACAATTGCCGGGTACCTTATGAAGAGAGACGGTGTCTCACGTCTTGTATTAGCACTGAGGCTACAGAAGGACATTGTGTTAGTGTTTCGTTGGAGGTTACTGAAAACTTTCCCAATCAGGTCAAAGTAGTAATTGAAGCTATTTCAACTAACAGTGCTGAAAATTCTGCACCCTGTGGTGCAGAAAGAATTCCTCTTGACTCACAAATTGCGTTTGATACAAGGGATTCAAAAGATTCTGCTGACGCTATTCACCAGGATTCATATAAGATTTCTGACAGTTGTGGTTTTCATTCTAGACCCAATGGTGATTGTGCCTCTTGTGAAGCTGCTTCTGCAACCAACGTCTTAATGCACCTTAGATCACAGAACATCACCAATAATAAGCCTTGGATGAAAGGGACTTCAGAGCTAGCTGAGCCTGATTTGCAGGTTGACCAAACTGCACGGAACAATGCTCCCTCCTTGTGGAGCCCAAACACTGCTTCTGGTGCGGCTCTTCACTGCGCATCTGCTGGCACTGCTTCACGTGGTAGTACTGAGGGGATAGTTTTGTCAAATCAAGCCAGTTGA 2784 0.4088 MAIDDTNSRKSAGVELEKKEVSHVAKSKVKQLVRDQIKEQLSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIPEEDFKILTKVINKQRKKKDKLVQKGGKGGKKVDGVNGKKNKEKSSSGAGMGKSMKRNMKRKTSPNRMPVVRDHKRHKTQNKKRCAPLVRNAEEIDSETEGYVLYSGKRTLLAWMIDLGTVLQNVKVHYMPHESKSAVLDGEITGNGIHCGCCGKIVTISDFEVHAGSKLADPLKNIYVEEGTSLLQCLLDSWNKQDESERKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQGCLDIKKFPSGDWHCIYCCCKFCGSVSGSSNQRDGNDELTVSKLLTCQLCEEKYHRSCIEANDANTNDSKDVFFCGNKCQELSERLEMLLGVKHEMEDGYSWTFIRRSDVGFDASQIKPQMVECNSKLAVAISIMDECFMPYIDHRSGINLIHSILYNRGSNFNRLNYSGFVTAILERGDEIICAASIRIRGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWGLSSLNVELLVIPAISELRETWTSVFGFEPLESTSKQILHNKNLLVFPHVDMLQKKISKHKLAGQNLIPSEAFNLKRNQIANNCDGAGSSGSDLINYTEIPPSCQINDETISIESGCHRNVKDHRISSKDGTCQVVCQAVHENLVMEDNNSIENACDYVTDTCCRAGDSQLNNCRVPYEERRCLTSCISTEATEGHCVSVSLEVTENFPNQVKVVIEAISTNSAENSAPCGAERIPLDSQIAFDTRDSKDSADAIHQDSYKISDSCGFHSRPNGDCASCEAASATNVLMHLRSQNITNNKPWMKGTSELAEPDLQVDQTARNNAPSLWSPNTASGAALHCASAGTASRGSTEGIVLSNQAS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02353 927 MobiDBLite consensus disorder prediction 120 187 - -
Pumo3g02353 927 ProSiteProfiles Zinc finger PHD-type profile. 320 365 IPR019787 -
Pumo3g02353 927 MobiDBLite consensus disorder prediction 130 145 - -
Pumo3g02353 927 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 382 IPR013083 -
Pumo3g02353 927 Pfam Tify domain binding domain 245 294 IPR032308 -
Pumo3g02353 927 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 463 623 IPR000182 GO:0016747
Pumo3g02353 927 SMART PHD_3 322 363 IPR001965 -
Pumo3g02353 927 SMART PHD_3 364 424 IPR001965 -
Pumo3g02353 927 PANTHER PHD FINGER PROTEIN 12 18 747 IPR042163 GO:0003714|GO:0045892
Pumo3g02353 927 SUPERFAMILY FYVE/PHD zinc finger 315 367 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02353 Pumo-Chr3 35803277 35810564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02353 25 629 PHD Transcription Factor Family AT5G36670 45.907 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02353 - - gmx:100784172 1547.72