Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02338 ATGGCTGCGCCACTAGGCACTAGGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGTCTCTTCTGGCAACTGTGTCCACAGCAAGTGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAGACTCGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCGTCTCTCCAAAGAAGCCAGCAACTCAGAGAACTCTATGAATCATTGTCCGCCGGAGAGACAAACCCACCAACTCGCCGGCCGTGTGCTGCCTTGTCGCCGGAGGACCTAACGGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCTTGGTGTTGGGTTGCCTGGGAAGGCATATGCTAGGAGGCAGCATATATGGCTCACTGCTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGTATACAGACCGTGGTGTGCATTCCATTATTGGACGGCGTCGTTGAGTTTGGCACAACGGATAAGGTTCAAGAAGACCTTAACTTCATCCAACACGTGAAGACCTTCTTCATAGACCACCACAACCCTCTGCCGCCGAAGCCCGCCTTGTCGGAGCACTCAACCTCCAACCCCACCTCCTCCTCCGACCACATCCCCGCCGTCATGTACACCGTCGCAGACCCACCCGCCGCCAATCCCTACCAAAACGACGACATGGACGAGGATGAGGAGGAAGAGGACGAGGACGAGGAGGAGGAAGAGGAGGAGGCGGAATCCGGCTCCGAGGACGAAACCAGAGACCGCATCTCCCGCCGAACCCCGACGCCAGCCGCGGCGGCGGAGCCCAGCGAGCTGATGCAGCTGGAGATGCCAGAGGACATCCGGGTCGGGTCTCCGAACGACGGGTCGAACAACTTGGACTCGGACTTTCACTTGCTGGCGGTGAGTCAGGGAAGGAACGCGGCGGGGCAGGCTGAGTCGACCCGGAGGTGGGGCCTGAGTCAAGAGCCCCTGCAAATTCAACTACCGGCTTCAGCCCTTCATCCTTTAGAAGATTTGACCCACGAGGACACTCACTACTCTCAAACGGTGTCCAACATTCTCCAAAACCAGTCCACACGGTGGCCCGCCTCGCCCTCCTCCGTTGGCTACATCACATACTCCACGCATTCAGCTTTCGCGAAATGGAGCAGCCGCGCCAGCCACCACTTCCACCCGGCGGTGGACGGCACCGGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCGTACCTCCACGCCAAGAACCCCGGCCAGAGTTCTCCCCAAACCACCGCGGACACCAAGCTCCGCGGCAAGGGAACCCCGCAGGACGAGCTCAGCGCCAACCACGTGCTGGCGGAGCGCCGACGCCGCGAGAAGCTGAATGAGCGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATACTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTGGAGGCGCGTAACCGCCAGACGGAGCCGGAACAGCGTTCCAAGCTCCCAGAGGTAACAATTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGCGGCGAAGGCGAAGGCAGTGGAAGTTGATGCCAACACGTCGGTGCAAGTTTCGATCATAGAGAGCGACGCGCTGTTGGAGATTGAGTGTCGTCACAGAGAAGGGTTGCTTCTGGACATGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATAGGGGTGCAGTCTTCGCTTAATAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCCAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCTGCTGACTTAGTACTATTCTATATTGGGCTTTGCGCAAGGAGGGGTGCATGCATCAAGTTAGCTAACATTTTCATGGCTTGA 2049 0.5661 MAAPLGTRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPLGVGLPGKAYARRQHIWLTAANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKTFFIDHHNPLPPKPALSEHSTSNPTSSSDHIPAVMYTVADPPAANPYQNDDMDEDEEEEDEDEEEEEEEAESGSEDETRDRISRRTPTPAAAAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQGRNAAGQAESTRRWGLSQEPLQIQLPASALHPLEDLTHEDTHYSQTVSNILQNQSTRWPASPSSVGYITYSTHSAFAKWSSRASHHFHPAVDGTGQWLLKYILFTVPYLHAKNPGQSSPQTTADTKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRQTEPEQRSKLPEVTIQRTSSSSSKEQQRSGVTVMEKRKVRIVEGVAAKAKAVEVDANTSVQVSIIESDALLEIECRHREGLLLDMMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAADLVLFYIGLCARRGACIKLANIFMA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02338 682 Gene3D - 455 526 IPR036638 GO:0046983
Pumo3g02338 682 MobiDBLite consensus disorder prediction 203 220 - -
Pumo3g02338 682 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Pumo3g02338 682 Pfam Helix-loop-helix DNA-binding domain 457 504 IPR011598 GO:0046983
Pumo3g02338 682 SMART finulus 460 509 IPR011598 GO:0046983
Pumo3g02338 682 MobiDBLite consensus disorder prediction 511 547 - -
Pumo3g02338 682 PANTHER TRANSCRIPTION FACTOR TT8 8 654 - -
Pumo3g02338 682 Coils Coil 493 520 - -
Pumo3g02338 682 MobiDBLite consensus disorder prediction 523 544 - -
Pumo3g02338 682 MobiDBLite consensus disorder prediction 198 287 - -
Pumo3g02338 682 MobiDBLite consensus disorder prediction 431 446 - -
Pumo3g02338 682 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Pumo3g02338 682 Coils Coil 237 260 - -
Pumo3g02338 682 MobiDBLite consensus disorder prediction 431 460 - -
Pumo3g02338 682 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 524 IPR036638 GO:0046983
Pumo3g02338 682 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02338 Pumo-Chr3 35604390 35616036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02338 296 659 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.669 6.83e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02338 bHLH-MYC_N 5.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02338 - - gmx:100786815 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03202 5 80976108 80978519 Pumo3g02338 3 35604390 35616036 PCT