Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02326 ATGGCCGTACGATGTCATTTTCAGTGCATGGTAGATGGAGGAATGCGAGACGTCGGGGATGTGATGGAAGAGCAAAGTAACCAAGAGAACCCTGGAGGAACCACCACCAATGATGTCTCTCATTCAGCTGAGGCTCATCTAATTCCAAGCCCAAAATTTGTGATTGGAGCATCATCTGGAAGAAATGGGAGCCACTGGACTTGCCTCCCAAAACTATTTCATCATAACTATGTTGAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGAATACATGATGGGGAGCAGTTATCTACCTGTTGCCAACATCAATGATGGTAATTATGGGGTCATTGGAACAGACAGAAGCCTCTTTTACAATGATCCAGGAAAAGCCTGTGCCTTTAAGCCTTTTGGTTCTTCAAGTAATGACCTTGACATTAGGAAGATGGGGTTTTGGAGAGCTGGTGAAGGAGATGAAGCTATTAAAGTTGAAACTGAAAGTAGTCAAAATCTTGTTTATGCTGAGAGTCATGCTTCATGGAAAGCAGATTCTGTTGGAAATAAGCATAATGCTTCACATGATCCAATGGCAATGGTTGGTGCACCTGCTTTACTTCCCAAACCAAGATGCAGCTCCTCAAAACAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTGCACGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCTTATATACTGGACGATATAATTGACTATGTCAAATATTTGCAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGCGGACTCAACTGCTATACCACTAGTTTTTCATGAGGGTTACGGCCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCAGCAGCAGCTGTTCAGCTACTAGAGAGTAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGAGTTGAGTGAGGCTATGCAAATGTTTGGAGGGAGTGCACTTGTCTGA 1044 0.4339 MAVRCHFQCMVDGGMRDVGDVMEEQSNQENPGGTTTNDVSHSAEAHLIPSPKFVIGASSGRNGSHWTCLPKLFHHNYVEYLSESSTYLPNTSTEYMMGSSYLPVANINDGNYGVIGTDRSLFYNDPGKACAFKPFGSSSNDLDIRKMGFWRAGEGDEAIKVETESSQNLVYAESHASWKADSVGNKHNASHDPMAMVGAPALLPKPRCSSSKQKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQADSTAIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAVQLLESKGLFLLPMALVDELSEAMQMFGGSALV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02326 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 330 - -
Pumo3g02326 347 Gene3D - 209 277 IPR036638 GO:0046983
Pumo3g02326 347 Pfam Helix-loop-helix DNA-binding domain 212 260 IPR011598 GO:0046983
Pumo3g02326 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Pumo3g02326 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 272 IPR036638 GO:0046983
Pumo3g02326 347 SMART finulus 216 265 IPR011598 GO:0046983
Pumo3g02326 347 CDD bHLH_AtbHLH_like 218 265 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02326 Pumo-Chr3 35435152 35438311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02326 205 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.129 1.81e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02326 HLH 6.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02326 - - gmx:100788949 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02326 3 35435152 35438311 Pumo3g02326 3 35435152 35438311 ECH