Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02311 ATGATTCCTTGGGGTGGCCTCGGTTGCTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCCGTTACAAGGGTCAATCAATTGAAGGAACTAGCACAACTGTTAGATGCAGAAATATTACCCTTGATTGTTACAATATCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGAGTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGGTCACTTGTACGTGGAACATTGGATTATCTGCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGGAGTATTCGAATTCAGCGACCCCACAAAGGACCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGATAGCCAAGCATGCTATTCGGTACATATTGGAAAGACGGCGCCGCAGCGAACTTCAAAGAAGGGTTCTTGCTGCAGCTGCTAAGAAGTCAGGACAAAATAATGAAGTTGAAAAGGCCGACAGCTTATCAGATGGTGCTAAAAGGGATTGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTTCGTCATTGA 1020 0.4422 MIPWGGLGCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVSSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGSIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASMGLTVFGAYLIAKHAIRYILERRRRSELQRRVLAAAAKKSGQNNEVEKADSLSDGAKRDCLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02311 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pumo3g02311 339 SUPERFAMILY RING/U-box 291 333 - -
Pumo3g02311 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Pumo3g02311 339 FunFam E3 ubiquitin-protein ligase SP1 280 338 - -
Pumo3g02311 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Pumo3g02311 339 CDD RING-HC_LRSAM1 292 335 - -
Pumo3g02311 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 338 IPR013083 -
Pumo3g02311 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02311 Pumo-Chr3 35289706 35294417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02311 1 271 C3H Transcription Factor Family AT1G63900 77.289 1.66e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02311 K15688 - gmx:100803252 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02311 3 35289706 35294417 Pumo3g02311 3 35289706 35294417 ECH