Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02298 ATGAGTTCCCTTCTCCTCTTTCTGTTCTTCTTTTTCCCTCTCTCTTCTGCCACGTGTCCCTTGAACTTCACCGTCCTCGGCAGCACGAAACCCACCTCCTTCGATTCGTCCCGGTGCCAGGTCATCAACCAGGCCCTCCACCTCGTCCAGTCGGACTACCTCGGCCGCAACGGGTCCTTCCTCCCTCCCCTCAACACCTCCGAGTCATGCTGGCAGAACTTCCAGTCCTACGTTAACCGCTTCGACCCCACCTACAACATCACCTCCTCCTGCGGCTACCAACCCTCATGGATCTCCCAAGGCTGCAACAACGTCACCACCAAACAAGACTTCGAATCCTTGATCCCTCAATCAGCCCTCCAAAACATGCGAAACAAGTGCAACCAATCGCTCGAGAATAACTCCCCCTGCGCCCTCTGCACCACTTCCTTCTCCACTCTCCCATCCTTGGGAAAGTCCATTGGGAACCTCACCGACTGCACCGACTACGCTTCCATCTACGCCGCCGCCTTCGCCAACCACTTCGGCCCCTCCGACCCCGGCACCGCCAAGTGCTTGTTCTCCCTCGAATTCTCCTCCAACAATTCCTCCTCCTCCGCCGCCAAGAGAAAGAAGGTTGTTATTGCGGTTGTTTCTGCTGTCTCTTTCTTGGTCGTGCTACTGCTGGCTCTAGGGTTTTGGGTTTATTTCAAGCTGGAAGACAAGGCGGGCAGGGATAAGGATGTTCGTGTGGCGGAAACCGGTTTGGTTTCGAGCCTTGATTCCATGGAGCAGAGCACAACCTTGATCAGGTTCACCTTTGATGACATTAAGAAAGCGACGAAGAATTTCTCGAGAGATAACATAGTTGGGAGAGGCGGTTATGGGAATGTGTACAAAGGGTTGCTTCCTGATGGGAGTGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCGGCATCCGGTGATGCAAGCTTCACTCACGAAGTTGAGGTTATTGCGAGTGTCAGGCATGTCAACCTTGTTGCCTTGAGAGGCTATTGTTCTGTGACTACTCGTTTGGAAGGTTACCAGAGGATTATTGTTTGCGATATGGTGAAAAACGGGAGTCTCCATGACCATTTGTTTGGGTCTAATGGGGTGAAATTAAGTTGGCCAATTCGGCAGAAGATTGCTCTAGGCACGGCTAGAGGGTTGGCTTATTTGCATTACGGGGCTCAACCTGCAATCATTCATAGAGATATTAAAGCAAGTAACATACTTTTGGATGATAAGTTTGAAGCCAAGGTTGCAGATTTTGGACTAGCCAAGTTTAACCCTGAGGGGATGACGCATATGAGCACTAGGGTGGCTGGAACAATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGGCAATTGACAGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAGACCAACAATGATGGTCAACCCTCTGCTTTGACTGATTTGGCTTGGTCGTTAGTTAGAACGGGTAAAGCTTTGGATGTTATTGAAGATGGCATGCCAGAACCTGCTTCAGAACAGGTTCTTGAGAAGTATGTGTTAATTGCTGTGCTTTGTTCTCATCCGCAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCGGTGCCTTCAATACCTGAAAGGCCAATCTCTTTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGTAGTAGTGGCTCTGGTCAGCTCTCTAGCCCAACGGGTTATCAATCATATACTATAGAAAGTGATCGCCCATCTTCTAATTCTAGGGAAGAAAGAAGCTCGAGCTCCAGGATTTTGAGTACAGATTGA 1863 0.4917 MSSLLLFLFFFFPLSSATCPLNFTVLGSTKPTSFDSSRCQVINQALHLVQSDYLGRNGSFLPPLNTSESCWQNFQSYVNRFDPTYNITSSCGYQPSWISQGCNNVTTKQDFESLIPQSALQNMRNKCNQSLENNSPCALCTTSFSTLPSLGKSIGNLTDCTDYASIYAAAFANHFGPSDPGTAKCLFSLEFSSNNSSSSAAKRKKVVIAVVSAVSFLVVLLLALGFWVYFKLEDKAGRDKDVRVAETGLVSSLDSMEQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSASGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFGSNGVKLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTNNDGQPSALTDLAWSLVRTGKALDVIEDGMPEPASEQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPISFVAGRLDIERSVSSSGSGQLSSPTGYQSYTIESDRPSSNSREERSSSSRILSTD 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02298 620 CDD STKc_IRAK 283 552 - -
Pumo3g02298 620 ProSiteProfiles Protein kinase domain profile. 277 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02298 620 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 238 356 - -
Pumo3g02298 620 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 605 - -
Pumo3g02298 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Pumo3g02298 620 Pfam SPARK 15 149 IPR043891 -
Pumo3g02298 620 SUPERFAMILY Protein kinase-like (PK-like) 260 564 IPR011009 -
Pumo3g02298 620 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 358 559 - -
Pumo3g02298 620 SMART serkin_6 277 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02298 620 Pfam Protein kinase domain 278 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02298 620 MobiDBLite consensus disorder prediction 577 620 - -
Pumo3g02298 620 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Pumo3g02298 620 MobiDBLite consensus disorder prediction 577 601 - -
Pumo3g02298 620 Gene3D Transferase(Phosphotransferase) domain 1 358 559 - -
Pumo3g02298 620 Gene3D Phosphorylase Kinase; domain 1 241 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02298 Pumo-Chr3 35134725 35137618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02298 8 606 Receptor kinase-like Gene Family AT2G48010 62.336 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Pumo3g02298 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02298 - - gmx:100800760 1019.99