Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02297 ATGTGTTTGTGGGTCACAAAAAAAATGAAGGAAAAGGTAGATTCCCCAGTTACTGTCCTTGAGGACTATTTCAGGAGCTCAGATTCAGAATCAAGTTCTTCCAAAGAGCCTACAGGGGATTCTGAGTCTCAAGACCTTTCAAAACATGCTTCTAGGTGGAATTCATTTCTTCAATTGTTTAGGAGTGGATCGAAGAAACAGATGAACACATTGCACCCTCTCAGTGTCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTCTCTTAGATGCAACTGCATCCCCCTGCAGGTCACCATGGAAGATCTTCACCCATCATGAGATTCAGGCTGCAACCAATTCTTTTAGCCAAGAAAATTTGATTGGGAAGGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGGTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTACAAGAACTTGGGGTAATGGCACATGTAAACCATCCCAATACTGCTAAGCTGGTTGGTTATGGGGTGGATGGTGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGGAGCCTAGCTTCAGTTCTTTATGGTTCCAAGGAGAAAATACCGTGGTGTATCAGACACAAAATTGCATTAGGAACAGCAAAGGGTATATTATATCTTCATGAGGGATGTCAAAGAAGAATTATCCACAGGGATATAAAAGCTGCGAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACCGTTTCAAAATTTGAAGGAACTTTCGGTTACCTAGCACCTGAATACTTGCTGCATGGCATAGTAGACGAGAAAACGGACGTATTCGCCTTTGGCGTATTGCTATTAGAATTAGTGAGTGGGCGAAGAGCGCTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATATCATGGAGTTGATTGATCCTTCACTAGCAGGTGGTGACTTCGATTCTAGGCAAATGAATCTTATGCTCTTGGCTGCTTCTTTATGCATACAACAGTCCTCAATTCGTCGCCCCTCTATAAGACAGGTTGTACAGCTTCTGAATGGCAACCTCAGCTGCTTTAAGGGCATGAAGAAAACTCGAATGCCGTTCTTCCGAAGAGTGTTTCGGGAAGAACTCCTTGATTCTGAATAG 1260 0.4278 MCLWVTKKMKEKVDSPVTVLEDYFRSSDSESSSSKEPTGDSESQDLSKHASRWNSFLQLFRSGSKKQMNTLHPLSVLKLSKRMSTSMRETILPSCLLDATASPCRSPWKIFTHHEIQAATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLQELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKIPWCIRHKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGGDFDSRQMNLMLLAASLCIQQSSIRRPSIRQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELLDSE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02297 419 Gene3D Transferase(Phosphotransferase) domain 1 200 402 - -
Pumo3g02297 419 ProSiteProfiles Protein kinase domain profile. 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02297 419 SMART serkin_6 123 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02297 419 Pfam Protein kinase domain 124 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02297 419 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 94 197 - -
Pumo3g02297 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Pumo3g02297 419 SUPERFAMILY Protein kinase-like (PK-like) 104 389 IPR011009 -
Pumo3g02297 419 Gene3D Phosphorylase Kinase; domain 1 98 197 - -
Pumo3g02297 419 ProSitePatterns Protein kinases ATP-binding region signature. 129 151 IPR017441 GO:0005524
Pumo3g02297 419 MobiDBLite consensus disorder prediction 24 47 - -
Pumo3g02297 419 PANTHER OS08G0249100 PROTEIN 7 417 IPR046958 -
Pumo3g02297 419 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 403 - -
Pumo3g02297 419 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02297 Pumo-Chr3 35094742 35098545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02297 110 385 Trihelix Transcription Factor Family AT1G68690 41.812 1.69e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo3g02297 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02297 - - gmx:100780587 768.459