Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02290 ATGGGGTCGAAACCGTGGCTCTACCCTGCTCCAACCTATCGAACTCTAGAATCCTTCTGGGACACCGATGAAGACTCGCCTGGCCCTCGCTGTGGCCACACCCTCACCACCGTCGCCGCCACCAAGACCCACGGCCCCCGCTTGATCCTATTCGGCGGCGCCACCGCCATTGAAGGAGGATCTTCCTCCGCTCCCGGCATTCGGTTAGCGGGAGTCACAAATACTGTTCATTCCTATGATGTTCAAAGTAGAAAATGGAGTAGTATTAAACCCGCCGGAGAGCCGCCGTCTCCTCGGGCTGCTCATGCTGCTGCTGCAGTTGGTACCATGGTTGTTTTTCAGGGTGGGATAGGTCCAGCGGGCCATTCAACTGATGATCTCTTTGTGCTTGACTTGACCAATGATAAGTACAAATGGCACAGGGTCGTTGTACAAGGGCAAGGACCCGGACCTCGCTATGGCCATGTAATGGACTTGGTTGCTCAGAGATATCTAGTAACTGTCAGTGGAAATGACGGGAAAAGAGTTGTATCTGATGCTTGGGCTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGCTGAACCCAGAAGGTGACAGACCTTCTGCAAGAATGTATGCAACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCACTAGCAGATGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACCCTTGCGCCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTTTTTGTTGGTGCAAGATTACATGTTACAGGAGGTGTTCTCAGGGGTGGACGGTCCGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCCGCTGGGGTTTGGTTGGACAGAAATGGCATTGTGTCCTCCTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTGGTGTTCATATATTTATCTATGGTGGTCTAAGAGGAGATACACTACTAGATGATTTCTTAGTGGCTGAAAATTCGCCATTACAGCCCGACATTAATTCTCCTGAGAGAGGTTCACCTGTTACAAGCTCAAAACAAAATCAATCTAACTTAAATTATAATGTAACACCAAGTTTGGATGGTGGACCGGACATTCCTTCATCTGGTGGCTCAGGCATGGACAAAAATTCCTTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCTGAGGCAGCGAGTGCTGTCTGGCAAGCTGTGCAGGCTATATCAAGTAATCCTGCTGAAGAAACATCTGCGTCAGATGACAACTCACAAGCTGCAGAAACAGTTTCAGATGGAAGTGACACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCCAAGGAGGCTGTAGGTAACCTAGGTGGAATGGTGAGACAATTATCGCTAGATCAATTTGAAAATGAAAGCAGACGCATGATTCCCGTAAATAATGATTTGCCGTATCCTACGAAAAAGTTTACCAGGCAGAAATCTCCTCAGGGTTTACATAAAAGGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCTGCCGAGCAAATATTTATGCATGAACCAACCGTTCTTCAGCTGAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGACTATTTGATGAATATGGATTTCCTTCTACTGCAGGAGACATCACCTATATTGACTACCTGTTTTTGGGAGATTATGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTGCTACTTGCTCTTAAGATCGAATATCCTGAGAATGTTCACTTGATACGTGGAAACCATGAAGCTGCCGACATAAATGCACTATTTGGTTTTCGTATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGGATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCATTAGCTGCTCTTATTGAAAAGAAAATTATCTGTATGCATGGTGGCATTGGAAGATCTATCCATTCAGTAGAACAGATAGAGAAGCTTGAAAGGCCCATAACAATGGATGCAGGATCTATTATCTTAATGGACCTTTTATGGTCTGATCCCACAGAGAATGATAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGCCCAGGGCTTGTCACTTTTGGGCCTGATCGTGTAACAGAATTTTGTAAGAAAAACAAATTACAGCTCATTATAAGGGCCCATGAGTGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAATTAATCACCCTTTTTTCTGCAACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTAGTTGGTAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCCATACCACCTCCTCTTCAGTCTCCCGAGACATCTCCTGAGCGTGGTACGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGGGGTCGACCTCAGCCTGACCTTGATCGTGGCTCACTAGCATACATATGA 2643 0.4635 MGSKPWLYPAPTYRTLESFWDTDEDSPGPRCGHTLTTVAATKTHGPRLILFGGATAIEGGSSSAPGIRLAGVTNTVHSYDVQSRKWSSIKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLFVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWALDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRSVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVGVHIFIYGGLRGDTLLDDFLVAENSPLQPDINSPERGSPVTSSKQNQSNLNYNVTPSLDGGPDIPSSGGSGMDKNSLEKLREASAAEAEAASAVWQAVQAISSNPAEETSASDDNSQAAETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPVNNDLPYPTKKFTRQKSPQGLHKRIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPIPPPLQSPETSPERGTDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02290 880 MobiDBLite consensus disorder prediction 360 409 - -
Pumo3g02290 880 MobiDBLite consensus disorder prediction 841 862 - -
Pumo3g02290 880 Gene3D - 195 362 IPR015915 GO:0005515
Pumo3g02290 880 SUPERFAMILY Metallo-dependent phosphatases 532 841 IPR029052 -
Pumo3g02290 880 MobiDBLite consensus disorder prediction 436 458 - -
Pumo3g02290 880 Gene3D - 8 194 IPR015915 GO:0005515
Pumo3g02290 880 FunFam Serine/threonine-protein phosphatase 195 363 - -
Pumo3g02290 880 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 880 - -
Pumo3g02290 880 SUPERFAMILY Kelch motif 70 357 IPR015915 GO:0005515
Pumo3g02290 880 FunFam Serine/threonine-protein phosphatase 514 853 - -
Pumo3g02290 880 MobiDBLite consensus disorder prediction 833 880 - -
Pumo3g02290 880 FunFam Serine/threonine-protein phosphatase 9 192 - -
Pumo3g02290 880 Pfam Calcineurin-like phosphoesterase 577 784 IPR004843 GO:0016787
Pumo3g02290 880 Pfam Serine-threonine protein phosphatase N-terminal domain 528 575 IPR031675 -
Pumo3g02290 880 SMART pp2a_7 549 833 IPR006186 GO:0016787
Pumo3g02290 880 Gene3D - 513 842 IPR029052 -
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 612 639 IPR006186 GO:0016787
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 683 709 IPR006186 GO:0016787
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 577 604 IPR006186 GO:0016787
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 773 793 IPR006186 GO:0016787
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 645 669 IPR006186 GO:0016787
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 713 740 IPR006186 GO:0016787
Pumo3g02290 880 PRINTS Serine/threonine phosphatase family signature 795 811 IPR006186 GO:0016787
Pumo3g02290 880 ProSitePatterns Serine/threonine specific protein phosphatases signature. 646 651 IPR006186 GO:0016787
Pumo3g02290 880 Pfam Kelch motif 96 133 - -
Pumo3g02290 880 MobiDBLite consensus disorder prediction 360 390 - -
Pumo3g02290 880 PIRSF STPPP_BSU1 1 880 IPR012391 GO:0004721|GO:0009742
Pumo3g02290 880 MobiDBLite consensus disorder prediction 436 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02290 Pumo-Chr3 34997453 35007309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02290 578 776 Calmodulin-binding Proteins AT5G63870 32.609 2.12e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02290 K01090 - gmx:100805538 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02290 3 34997453 35007309 Pumo3g02290 3 34997453 35007309 ECH