Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02284 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAGGAGAGTGTGAAGCTCTTCGTGGGTCAAGTGCCGAAGCGCATGACGGAAGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAGCTACTCGTGCCTCCCGAGGTTGTTGCTTTGTAATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCCTGTCATAACAAGAAGACGCTTCCTGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTGTCGGCATGCTTCCTAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCTAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTTGAGGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACTAGCTCGAAAGGCTCAAAAAGCACAGTCCCAAGTTTCTAATGTGCCGCATGCTGATCCTCAACACCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGTGGTTATGGGCTCATGCCATACCGTTTTCCAACAATGCAGAATCAACCTGGTTTCCATAATATGAACATGAACCAAGTAAATGCAGTGAGGCCTGATCTTGGTCACAGTATGAACCCTAGAAATTATTCTGCGCCTCCTGCAAATTACATTGGCTCTTATCCTGCTGTGCCAGGTATACAGCATCCAATGGCATATCCCAGAGGAATTATAAGTCCAAGGCCAATGAGTAGTTCTCCTGGTTCTGTTTCACCTGCAGGTGGGAATGGCAACTCTTCAACTTCAGGTGCCAGTAAAAGTTCCAGTGGTCAGATTGAAGGACCACCCGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGAGCTTGCAACTGCATTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGTAACGGGTGTAAGCAAATGTTTCGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTAGTAAGAAATTGAAGGTTCAGCTTAAGAGGGACAACAAACAGAGTAAGATTTACTGA 1287 0.4359 MAEGKEESKSSEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNIIRDKATRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNISEDEVSDLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHTMEGSSVPLVVKWADTEKERLARKAQKAQSQVSNVPHADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRFPTMQNQPGFHNMNMNQVNAVRPDLGHSMNPRNYSAPPANYIGSYPAVPGIQHPMAYPRGIISPRPMSSSPGSVSPAGGNGNSSTSGASKSSSGQIEGPPGANLFIYHIPQEYGDQELATAFQPFGRVLSAKIFVDKVTGVSKCFGFVSYDTPEAAQAAISTMNGCQLGSKKLKVQLKRDNKQSKIY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02284 428 CDD RRM1_2_CELF1-6_like 104 179 - -
Pumo3g02284 428 FunFam RNA-binding protein BRN1 2 99 - -
Pumo3g02284 428 Coils Coil 178 198 - -
Pumo3g02284 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Pumo3g02284 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 415 IPR000504 GO:0003723
Pumo3g02284 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pumo3g02284 428 Gene3D - 100 191 IPR012677 -
Pumo3g02284 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 421 IPR000504 GO:0003723
Pumo3g02284 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Pumo3g02284 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pumo3g02284 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pumo3g02284 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pumo3g02284 428 PANTHER RNA BINDING PROTEIN 14 422 - -
Pumo3g02284 428 Gene3D - 2 99 IPR012677 -
Pumo3g02284 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pumo3g02284 428 Gene3D - 320 427 IPR012677 -
Pumo3g02284 428 CDD RRM1_2_CELF1-6_like 16 92 - -
Pumo3g02284 428 MobiDBLite consensus disorder prediction 307 337 - -
Pumo3g02284 428 CDD RRM3_CELF1-6 345 417 - -
Pumo3g02284 428 FunFam RNA-binding protein BRN1 311 420 - -
Pumo3g02284 428 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Pumo3g02284 428 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pumo3g02284 428 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pumo3g02284 428 SMART rrm1_1 344 417 IPR000504 GO:0003723
Pumo3g02284 428 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Pumo3g02284 428 SUPERFAMILY RNA-binding domain, RBD 103 423 IPR035979 GO:0003676
Pumo3g02284 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pumo3g02284 428 MobiDBLite consensus disorder prediction 300 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02284 Pumo-Chr3 34912327 34916385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02284 342 427 Eukaryotic Initiation Factors Gene Family AT2G23350 30.682 9.78e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02284 K13207 - gmx:100796156 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02284 3 34912327 34916385 Pumo3g02284 3 34912327 34916385 ECH
Pumo5g03333 5 82465159 82469882 Pumo3g02284 3 34912327 34916385 PCT